STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnBSimilar to Escherichia coli asparagine synthetase B [glutamine-hydrolyzing] AsnB or b0674 SWALL:ASNB_ECOLI (SWALL:P22106) (553 aa) fasta scores: E(): 9.7e-211, 91.68% id in 553 aa. (554 aa)    
Predicted Functional Partners:
thrA
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I [includes: aspartokinase I; homoserine dehydrogenase I] thra or thra1 or thra2 or b0002 SWALL:AK1H_ECOLI (SWALL:P00561) (820 aa) fasta scores: E(): 0, 82.41% id in 819 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
 
 0.986
ansA
Similar to Escherichia coli, and Escherichia coli O157:H7 L-asparaginase I AnsA or b1767 or z2801 or ecs2474 SWALL:ASG1_ECOLI (SWALL:P18840) (338 aa) fasta scores: E(): 7e-103, 81.12% id in 339 aa.
  
  
 0.983
metL
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL or MetM or b3940 SWALL:AK2H_ECOLI (SWALL:P00562) (809 aa) fasta scores: E(): 0, 83.12% id in 800 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
 
 0.983
ECA0132
L-asparaginase; Similar to Arabidopsis thaliana L-asparaginase at5g08100 or t22d6_40 SWALL:ASPG_ARATH (SWALL:P50287) (315 aa) fasta scores: E(): 7.9e-38, 44.22% id in 303 aa, and to Escherichia coli putative L-asparaginase precursor ybik or b0828 SWALL:ASGX_ECOLI (SWALL:P37595) (321 aa) fasta scores: E(): 3.2e-73, 65.39% id in 315 aa.
     
 0.975
ansB1
Similar to Erwinia chrysanthemi L-asparaginase precursor AnsB or Asn SWALL:ASPG_ERWCH (SWALL:P06608) (348 aa) fasta scores: E(): 8.8e-95, 77.16% id in 346 aa, and to Salmonella typhimurium putative L-asparaginase stm3598 SWALL:Q8ZLD3 (EMBL:AE008866) (347 aa) fasta scores: E(): 9.5e-87, 70.23% id in 346 aa.
     
 0.974
aatA
Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 5.9e-80, 50.62% id in 399 aa, and to Agrobacterium tumefaciens aspartate aminotransferase A AatA or atu4278 or agr_l_1171 SWALL:Q8U821 (EMBL:AE009356) (412 aa) fasta scores: E(): 7.9e-115, 72.04% id in 397 aa.
     
 0.972
lysC
Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or b4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 9.4e-136, 80.89% id in 445 aa; Belongs to the aspartokinase family.
 
 
 0.970
pyrB
Aspartate carbamoyltransferase catalytic subunit; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aspartate carbamoyltransferase catalytic chain PyrB or b4245 or c5345 or z5856 or ecs5222 or sf4245 SWALL:PYRB_ECOLI (SWALL:P00479) (310 aa) fasta scores: E(): 7.7e-100, 85.43% id in 309 aa; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.958
asnA
Putative asparagine synthetase A; Similar to Escherichia coli aspartate-ammonia ligase AsnA SWALL:ASNA_ECOLI (SWALL:P00963) (330 aa) fasta scores: E(): 2.7e-107, 81.51% id in 330 aa.
   
 
 0.957
aspC
Similar to Escherichia coli aspartate aminotransferase AspC or b0928 SWALL:AAT_ECOLI (SWALL:P00509) (396 aa) fasta scores: E(): 1.2e-137, 84.59% id in 396 aa.
   
 0.955
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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