STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagCN-acetylglucosamine repressor; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri N-acetylglucosamine repressor NagC or NagR or b0676 or c0751 or z0823 or ecs0706 or sf0617 SWALL:NAGC_ECOLI (SWALL:P15301) (406 aa) fasta scores: E(): 7.3e-114, 74.87% id in 406 aa. (407 aa)    
Predicted Functional Partners:
nagE
Similar to Escherichia coli PTS system, N-acetylglucosamine-specific IIABC component NagE or pPstN or b0679 SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 7.8e-62, 45.16% id in 496 aa.
  
 0.914
ECA0661
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.4e-60, 42.76% id in 622 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.6e-60, 42.09% id in 639 aa.
  
 0.891
ECA0860
Similar to Bacillus subtilis PTS system, beta-glucoside-specific IIabc component BglP or N17C SWALL:PTBA_BACSU (SWALL:P40739) (609 aa) fasta scores: E(): 1.1e-61, 39.06% id in 640 aa, and to Escherichia coli PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 6.6e-58, 38.55% id in 472 aa.
  
 0.891
arbF
Similar to Erwinia chrysanthemi pts system, beta-glucoside-specific IIABC component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 4.9e-165, 70.14% id in 633 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIABC component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 2e-130, 57.07% id in 629 aa.
  
 0.891
ECA4388
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 6.6e-81, 37.57% id in 636 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 9.4e-80, 38.6% id in 632 aa.
  
 0.891
fruA
Similar to Escherichia coli pts system, fructose-specific IIbc component FruA or PtsF or b2167 SWALL:PTFB_ECOLI (SWALL:P20966) (563 aa) fasta scores: E(): 1.4e-146, 75.13% id in 567 aa.
    
 0.872
nagA
N-acetylglucosamine-6-phosphate deacetylase; Similar to Escherichia coli, and Escherichia coli O157:H7 N-acetylglucosamine-6-phosphate deacetylase NagA or b0677 or z0824 or ecs0707 SWALL:NAGA_ECOLI (SWALL:P15300) (382 aa) fasta scores: E(): 1.7e-109, 72.55% id in 379 aa.
 
 
 0.813
scrA
Similar to Klebsiella pneumoniae PTS system, sucrose-specific IIbc component ScrA SWALL:PTSB_KLEPN (SWALL:P27219) (456 aa) fasta scores: E(): 2.1e-142, 80.92% id in 456 aa, and to Erwinia amylovora enzyme II ScrA SWALL:Q9F499 (EMBL:AJ250722) (457 aa) fasta scores: E(): 9e-140, 80.97% id in 452 aa.
  
 0.794
ptsG
PTS system, glucose-specific IIBC component; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific IIBC component PtsG or GlcA or Umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 7.7e-159, 87.42% id in 477 aa.
  
 0.794
aglA
Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 6.7e-142, 69.04% id in 533 aa.
  
 0.794
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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