STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1345ABC transporter permease protein; Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 2e-26, 24.36% id in 550 aa, and to Pasteurella multocida AfuB afub_2 or pm1455 SWALL:Q9CKZ5 (EMBL:AE006182) (564 aa) fasta scores: E(): 5.6e-41, 28.39% id in 553 aa. (551 aa)    
Predicted Functional Partners:
ECA1346
ABC transporter substrate binding protein; Similar to Rhizobium meliloti putative periplasmic iron-binding protein AfuA or r02056 or smc04317 SWALL:Q9Z3S7 (EMBL:AF030523) (326 aa) fasta scores: E(): 2e-23, 33.12% id in 326 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 8.6e-22, 30.93% id in 320 aa.
 
 
  0.974
ECA1347
Similar to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 5.2e-35, 50.21% id in 233 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 7.6e-35, 47.52% id in 242 aa.
 
  
  0.940
afuA
ABC transporter iron-binding protein; Similar to Actinobacillus pleuropneumoniae AfuA protein afuA SWALL:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 1.4e-97, 69.56% id in 345 aa, and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA or z0460 or ecs0415 SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 4.2e-115, 84.01% id in 344 aa.
 
 
  0.922
ECA3330
ATP transporter ATP-binding protein; Similar to Pasteurella haemolytica ATPase FbpC SWALL:Q9ZHY0 (EMBL:AF047427) (336 aa) fasta scores: E(): 8.5e-53, 44.57% id in 341 aa, and to Vibrio vulnificus ABC-type spermidine/putrescine transport system, ATPase component vv11663 SWALL:AAO10080 (EMBL:AE016802) (342 aa) fasta scores: E(): 1.3e-51, 44.14% id in 333 aa; Belongs to the ABC transporter superfamily.
 
 
 0.921
sfuC
iron(III)-transport ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.920
ECA1468
Similar to Pseudomonas putida ABC transporter, ATP-binding protein, putative pp1078 SWALL:AAN66703 (EMBL:AE016778) (369 aa) fasta scores: E(): 1.5e-40, 54.5% id in 222 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 1.5e-37, 54.83% id in 217 aa.
 
 
 0.917
afuC
Ferric ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.907
sfuA
Similar to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 1.3e-102, 82.84% id in 338 aa, and to Yersinia enterocolitica YfuA SWALL:Q56925 (EMBL:Z47200) (338 aa) fasta scores: E(): 4.7e-99, 80.17% id in 338 aa.
 
 
  0.880
ECA4250
Similar to Escherichia coli putrescine transport ATP-binding protein PotG or b0855 SWALL:POTG_ECOLI (SWALL:P31134) (377 aa) fasta scores: E(): 1.2e-43, 41.97% id in 355 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 1e-45, 44.02% id in 318 aa, and to Rhizobium meliloti putative ABC transporter, ATP-binding protein ra1191 or sma2207 SWALL:Q92XQ3 (EMBL:AE007304) (361 aa) fasta scores: E(): 1.5e-45, 43.42% id in 350 aa.
 
  
  0.870
ECA1470
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein fbpa or atu0407 or agr_c_715 SWALL:Q8UI91 (EMBL:AE009011) (351 aa) fasta scores: E(): 5.4e-84, 64.18% id in 349 aa, and to Brucella melitensis iron bmeii0584 SWALL:Q8YCE7 (EMBL:AE009695) (338 aa) fasta scores: E(): 1.2e-83, 64.93% id in 328 aa.
 
 
  0.858
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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