STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1368Putative membrane protein; Similar to Erwinia chrysanthemi YbgE protein SWALL:Q937K8 (EMBL:AJ297885) (97 aa) fasta scores: E(): 1.7e-31, 79.16% id in 96 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein YbgE or b0735 or c0814 or z0903 or ecs0770 or sf0562 SWALL:YBGE_ECOLI (SWALL:P37343) (97 aa) fasta scores: E(): 4.2e-26, 63.54% id in 96 aa. (97 aa)    
Predicted Functional Partners:
cydB1
Cytochrome D ubiquinol oxidase subunit II; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 4.4e-123, 80.21% id in 379 aa.
  
    0.785
ECA3608
Similar to Yersinia pestis hypothetical protein ypo3533 or y0650 SWALL:Q8ZB86 (EMBL:AJ414157) (246 aa) fasta scores: E(): 7.2e-27, 42.8% id in 250 aa, and to Shigella flexneri orf, conserved hypothetical protein ytfb or sf4280 SWALL:AAN45698 (EMBL:AE015436) (193 aa) fasta scores: E(): 9e-23, 43.93% id in 198 aa.
  
     0.774
ECA2519
Conserved hypothetical protein; Similar to Escherichia coli protein yecm or b1875 SWALL:YECM_ECOLI (SWALL:P52007) (188 aa) fasta scores: E(): 1.5e-43, 59.88% id in 177 aa, and to Salmonella typhi hypothetical protein Sty2116 SWALL:Q8Z5V8 (EMBL:AL627272) (189 aa) fasta scores: E(): 1.4e-42, 58.98% id in 178 aa.
  
     0.772
ECA3037
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa; Belongs to the UPF0304 family.
  
     0.770
cpxP
Putative stress resistance protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri periplasmic protein cpxp precursor CpxP or b3913/b3914 or c4865 or sf3992 SWALL:CPXP_ECOLI (SWALL:P32158) (166 aa) fasta scores: E(): 6.2e-20, 50% id in 140 aa.
  
     0.769
wzzE
Lipopolysaccharide biosynthesis protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.766
ECA4363
Similar to Yersinia pestis putative membrane protein ypo3996 SWALL:Q8ZA24 (EMBL:AJ414160) (671 aa) fasta scores: E(): 4.1e-57, 47.29% id in 406 aa, and to Escherichia coli O6 protein yhjk yhjk or c4341 SWALL:AAN82777 (EMBL:AE016768) (662 aa) fasta scores: E(): 3.8e-47, 41.35% id in 399 aa.
  
     0.764
cydA1
Cytochrome D ubiquinol oxidase subunit I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 2.3e-178, 83.9% id in 522 aa.
  
    0.763
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.763
ECA4240
Similar to Yersinia pestis putative membrane protein ypo3912 or y0323 SWALL:AAM83914 (EMBL:AJ414159) (135 aa) fasta scores: E(): 3e-29, 63.86% id in 119 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yijd or b3964 or c4927 or z5525 or ecs4895 SWALL:YIJD_ECOLI (SWALL:P27308) (119 aa) fasta scores: E(): 4.3e-29, 65.48% id in 113 aa.
  
     0.762
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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