STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cusASimilar to Escherichia coli putative cation efflux system protein CusA or b0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 0, 65.54% id in 1042 aa; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)    
Predicted Functional Partners:
cusB
Similar to Escherichia coli putative copper efflux system protein CusB precursor CusB or b0574 SWALL:CUSB_ECOLI (SWALL:P77239) (407 aa) fasta scores: E(): 8.2e-44, 37.94% id in 398 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.995
ECA1386
Putative exported protein; Similar to Escherichia coli hypothetical protein CusX precursor CusX or b0573 SWALL:CUSX_ECOLI (SWALL:P77214) (110 aa) fasta scores: E(): 1.5e-06, 35.13% id in 111 aa, and to Shigella flexneri orf, conserved hypothetical protein ylcc or sf0474 SWALL:AAN42127 (EMBL:AE015079) (110 aa) fasta scores: E(): 1.5e-06, 35.13% id in 111 aa.
 
 
 0.961
ECA1385
Putative exported protein; Similar to Alcaligenes eutrophus nickel and cobalt resistance protein CnrC precursor SWALL:CNRC_ALCEU (SWALL:P37974) (418 aa) fasta scores: E(): 1.4e-05, 23.51% id in 404 aa, and to Pseudomonas putida heavy metal Rnd efflux outer membrane protein, czcc family pp5385 SWALL:AAN70950 (EMBL:AE016794) (417 aa) fasta scores: E(): 1.5e-28, 32.61% id in 417 aa.
 
  
 0.942
ECA2932
Similar to Ralstonia solanacearum putative drug efflux lipoprotein rsc3208 or rs02424 SWALL:Q8XUI0 (EMBL:AL646074) (486 aa) fasta scores: E(): 4e-119, 69.19% id in 487 aa, and to Xanthomonas campestris outer membrane protein oprn or xcc0419 SWALL:Q8PDC1 (EMBL:AE012139) (490 aa) fasta scores: E(): 9.1e-110, 65.09% id in 487 aa.
  
 0.584
ECA1387
Putative membrane protein; Similar to Ralstonia solanacearum hypothetical transmembrane protein rsp0925 or rs05408 SWALL:Q8XRD3 (EMBL:AL646081) (136 aa) fasta scores: E(): 0.11, 26.57% id in 143 aa.
       0.563
ECA2930
HlyD-family secretion protein; Similar to Pseudomonas putida RND efflux membrane fusion protein pp3301 SWALL:AAN68908 (EMBL:AE016786) (367 aa) fasta scores: E(): 2.8e-81, 70.1% id in 368 aa, and to Xylella fastidiosa component of multidrug efflux system xf2084 SWALL:Q9PBQ6 (EMBL:AE004023) (368 aa) fasta scores: E(): 3.9e-75, 63.95% id in 369 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.552
fepA
TonB dependent siderophore receptor; Similar to Escherichia coli ferrienterobactin receptor precursor FepA or Fep or FeuB or b0584 SWALL:FEPA_ECOLI (SWALL:P05825) (746 aa) fasta scores: E(): 1.6e-186, 63.68% id in 738 aa, and to Pseudomonas aeruginosa ferric enterobactin receptor precursor pfea or pa2688 SWALL:PFEA_PSEAE (SWALL:Q05098) (746 aa) fasta scores: E(): 1.1e-187, 66.1% id in 717 aa.
      
 0.544
mexC
Multidrug resistance protein; Similar to Pseudomonas aeruginosa membrane fusion protein MexC or pa4599 SWALL:Q51395 (EMBL:U57969) (387 aa) fasta scores: E(): 6.2e-63, 50.78% id in 384 aa, and to uncultured bacterium MexC protein MexC SWALL:Q8RSM2 (EMBL:AJ431260) (388 aa) fasta scores: E(): 9.2e-63, 53.6% id in 375 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.541
opgH
Periplasmic glucans biosynthesis protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
      
 0.540
mdtA
Similar to Salmonella typhimurium putative HlyD family secretion protein stm2126 SWALL:Q8ZNQ3 (EMBL:AE008794) (413 aa) fasta scores: E(): 1.9e-84, 63.27% id in 403 aa, and to Salmonella typhi putative efflux system protein sty2339 SWALL:Q8Z5F8 (EMBL:AL627273) (413 aa) fasta scores: E(): 2.2e-84, 63.27% id in 403 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.533
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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