STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1400Similar to Escherichia coli putative nucleoside transporter YegT or b2098 SWALL:YEGT_ECOLI (SWALL:P76417) (425 aa) fasta scores: E(): 7e-56, 38.47% id in 408 aa, and to Salmonella typhimurium, and Salmonella typhi putative mfs family transport protein YegT or stm2142 or sty2371 SWALL:Q8XEM8 (EMBL:AE008795) (423 aa) fasta scores: E(): 1.1e-55, 39.11% id in 409 aa. (414 aa)    
Predicted Functional Partners:
ECA1399
Similar to Agrobacterium tumefaciens hypothetical protein atu4374 or agr_l_986 SWALL:Q8U7S5 (EMBL:AE009366) (349 aa) fasta scores: E(): 4.3e-104, 67.42% id in 350 aa, and to Caulobacter crescentus hypothetical protein Cc1631 SWALL:Q9A7T9 (EMBL:AE005838) (351 aa) fasta scores: E(): 5.1e-102, 68.09% id in 351 aa.
 
  
 0.800
ECA1398
Putativeoxidoreductase; Similar to Bacillus halodurans hypothetical protein Bh0710 bh0710 SWALL:Q9KEY9 (EMBL:AP001509) (388 aa) fasta scores: E(): 9e-27, 28.78% id in 396 aa, and to Streptomyces coelicolor putative oxidoreductase sco6988 or sc8f11.14C SWALL:Q9KZG4 (EMBL:AL939129) (387 aa) fasta scores: E(): 1e-20, 29.23% id in 390 aa.
 
     0.687
ECA1396
Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein atu4376 or agr_l_982 SWALL:Q8U7S3 (EMBL:AE009366) (284 aa) fasta scores: E(): 2e-44, 43.5% id in 285 aa, and to Rhizobium meliloti hypothetical protein r01924 or smc04254 SWALL:Q92P69 (EMBL:AL591788) (253 aa) fasta scores: E(): 6.9e-22, 32.63% id in 239 aa.
 
    0.642
glk
Glucokinase; Similar to Escherichia coli, and Escherichia coli O157:H7 glucokinase Glk or b2388 or z3654 or ecs3268 SWALL:GLK_ECOLI (SWALL:P46880) (321 aa) fasta scores: E(): 7.3e-98, 76.32% id in 321 aa; Belongs to the bacterial glucokinase family.
       0.502
paeX
Similar to Erwinia chrysanthemi pectin acetylesterase precursor PaeX SWALL:Q83V97 (EMBL:AJ507215) (322 aa) fasta scores: E(): 1.6e-94, 78.06% id in 310 aa, and to Xanthomonas campestris xylanase XynB or xcc0144 SWALL:Q8PE39 (EMBL:AE012110) (329 aa) fasta scores: E(): 3.3e-61, 56.08% id in 296 aa.
 
     0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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