STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1402Similar to Yersinia pestis hypothetical protein ypo1148 or y3034 SWALL:Q8ZGX5 (EMBL:AJ414146) (273 aa) fasta scores: E(): 7.9e-71, 67.39% id in 273 aa, and to Escherichia coli hypothetical protein ybha or b0766 SWALL:YBHA_ECOLI (SWALL:P21829) (272 aa) fasta scores: E(): 1.8e-61, 58.82% id in 272 aa. (273 aa)    
Predicted Functional Partners:
ECA2003
Putative exported protein; Similar to Yersinia pestis hypothetical protein y2005 SWALL:AAM85571 (EMBL:AE013803) (898 aa) fasta scores: E(): 1e-188, 52.6% id in 865 aa, and to Escherichia coli O6 hypothetical protein ydbh or c1828 SWALL:AAN80292 (EMBL:AE016760) (879 aa) fasta scores: E(): 2.9e-148, 44.01% id in 861 aa.
 
     0.525
slt
Similar to Escherichia coli soluble lytic murein transglycosylase precursor Slt or SltY or b4392 SWALL:SLT_ECOLI (SWALL:P03810) (645 aa) fasta scores: E(): 1.6e-161, 60.31% id in 645 aa.
 
   
 0.451
ompN
Similar to Escherichia coli outer membrane protein N precursor OmpN or b1377 SWALL:OMPN_ECOLI (SWALL:P77747) (377 aa) fasta scores: E(): 1.1e-76, 53.86% id in 388 aa.
  
     0.436
rof
Modulator of rho-dependent transcription termination; Similar to Escherichia coli, and Shigella flexneri Rof protein or b0189 or sf0179 SWALL:ROF_ECOLI (SWALL:P52098) (84 aa) fasta scores: E(): 3.4e-22, 70.23% id in 84 aa, and to Salmonella typhimurium modulator of rho-dependent transcription termination Rof or stm0237 SWALL:Q8ZRN4 (EMBL:AE008706) (86 aa) fasta scores: E(): 2.9e-20, 66.27% id in 86 aa.
  
     0.430
ECA0943
Similar to Escherichia coli f15 P-fimbriae major subunit precursor FfiA SWALL:P71218 (EMBL:Y08929) (168 aa) fasta scores: E(): 2.8e-17, 38.5% id in 174 aa, and to Serratia marcescens fimbria A protein precursor SmfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 1.3e-16, 39.34% id in 183 aa.
  
     0.404
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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