STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglConserved hypothetical protein; Catalyzes the hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate. (332 aa)    
Predicted Functional Partners:
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
 
  
 0.925
ECA3507
Putative exported protein; Similar to Bradyrhizobium japonicum Blr0368 protein Blr0368 SWALL:BAC45633 (EMBL:AP005936) (398 aa) fasta scores: E(): 5.2e-15, 43.73% id in 359 aa, and to Yersinia pestis hypothetical protein ypo1149 or y3033 SWALL:Q8ZGX4 (EMBL:AJ414146) (334 aa) fasta scores: E(): 3.3e-12, 36.31% id in 347 aa.
  
  
 
0.914
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.913
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
     
 0.900
gntV
Gluconokinase; Similar to Escherichia coli thermosensitive gluconokinase IdnK or GntV or b4268 SWALL:IDNK_ECOLI (SWALL:P39208) (187 aa) fasta scores: E(): 5.8e-34, 62.02% id in 158 aa.
     
  0.900
ECA2472
Putative exported protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein yeby precursor yeby or b1839 or sf1850 SWALL:YEBY_ECOLI (SWALL:P76277) (113 aa) fasta scores: E(): 7.8e-23, 56.63% id in 113 aa, and to Yersinia pestis putative exported protein ypo1786 or y2521 SWALL:Q8ZFC8 (EMBL:AJ414150) (118 aa) fasta scores: E(): 1.1e-22, 57.14% id in 112 aa.
  
     0.505
sseB
Enhanced serine sensitivity protein; Similar to Escherichia coli, and Shigella flexneri protein SseB or b2522 or sf2569 SWALL:SSEB_ECOLI (SWALL:P31143) (258 aa) fasta scores: E(): 1.6e-51, 55.11% id in 254 aa.
  
     0.405
flk
Cell division protein; Acts as a regulator of flagellar gene expression by modulating the protein level of the anti sigma factor FlgM upon sensing ring completion or hook elongation. Flk could inhibit FlgM secretion by acting as a braking system for the flagellar-associated type III secretion system.
  
     0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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