STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1415Similar to Yersinia pestis putative membrane protein ypo1527 SWALL:Q8ZFZ6 (EMBL:AJ414148) (528 aa) fasta scores: E(): 2.8e-151, 74.05% id in 528 aa, and to Escherichia coli hypothetical protein yegh or b2063 SWALL:YEGH_ECOLI (SWALL:P76389) (527 aa) fasta scores: E(): 1e-139, 69.18% id in 529 aa. (528 aa)    
Predicted Functional Partners:
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
 0.698
ECA0009
Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative outer membrane proteinYgiW or stm3176 or sty3353 SWALL:Q8XGT5 (EMBL:AE008846) (130 aa) fasta scores: E(): 1.8e-27, 63.35% id in 131 aa, and to Yersinia pestis putative exported protein ypo3027 or y1455 SWALL:Q8ZCG4 (EMBL:AJ414155) (137 aa) fasta scores: E(): 1.4e-20, 50.73% id in 136 aa.
  
  
 0.562
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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