STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfcPutative O-antigen polymerase; Similar to Salmonella typhimurium, and Salmonella typhi O-antigen polymerase Rfc or stm1332 or sty1779 SWALL:RFC_SALTY (SWALL:P26479) (407 aa) fasta scores: E(): 1.4e-54, 39.58% id in 389 aa. (400 aa)    
Predicted Functional Partners:
ECA1434
Putative glycosyl transferase; Similar to Vibrio cholerae WblE protein SWALL:O87161 (EMBL:AB012957) (359 aa) fasta scores: E(): 2.9e-09, 26.18% id in 317 aa, and to Streptococcus thermophilus EpsG SWALL:Q56044 (EMBL:U40830) (372 aa) fasta scores: E(): 1.1e-08, 26.85% id in 324 aa.
       0.773
rfbX
Similar to Salmonella typhi putative O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.3e-41, 33.25% id in 418 aa, and to Yersinia pseudotuberculosis putative O-antigen export protein RfbX SWALL:RFBX_YERPS (SWALL:Q05347) (437 aa) fasta scores: E(): 3.6e-33, 35.66% id in 429 aa.
     
 0.734
ECA1432
Putative glycosyl transferase; Similar to Streptococcus agalactiae CpsI cpsI SWALL:Q9RPC3 (EMBL:AF163833) (322 aa) fasta scores: E(): 2.4e-08, 26.76% id in 213 aa, and to Chlorobium tepidum glycosyl transferase ct0919 SWALL:Q8KDX5 (EMBL:AE012857) (288 aa) fasta scores: E(): 7.9e-13, 29.48% id in 251 aa.
       0.732
ECA1433
Similar to Ralstonia solanacearum putative acyl transferase protein rsp1012 or rs02346 SWALL:Q8XR49 (EMBL:AL646082) (170 aa) fasta scores: E(): 4.2e-11, 36.7% id in 188 aa, and to Methanococcus jannaschii hypothetical protein Mj1064 SWALL:YA64_METJA (SWALL:Q58464) (214 aa) fasta scores: E(): 5.1e-10, 31.75% id in 211 aa.
       0.732
rfbU
Putative glycosyl transferase; Similar to Salmonella typhimurium RfbU protein RfbU or stm2086 SWALL:RFBU_SALTY (SWALL:P26402) (353 aa) fasta scores: E(): 2.8e-40, 45.65% id in 357 aa, and to Salmonella typhi putative glycosyltransferase RfbU or sty2295 SWALL:Q8Z5I8 (EMBL:AL627273) (353 aa) fasta scores: E(): 2.8e-40, 45.93% id in 357 aa.
  
    0.668
rfbM
Similar to Escherichia coli mannose-1-phosphate guanylyltransferase ManC or CpsB or RfbM or b2049 SWALL:MANC_ECOLI (SWALL:P24174) (478 aa) fasta scores: E(): 2.1e-114, 60.88% id in 473 aa, and to Shigella flexneri mannose-1-phosphate guanyltransferase CpsB_1 or sf2112 SWALL:AAN43651 (EMBL:AE015227) (478 aa) fasta scores: E(): 5.5e-115, 61.31% id in 473 aa; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.443
rfbN
Similar to Salmonella typhimurium o antigen biosynthesis rhamnosyltransferase RfbN or stm2085 SWALL:RFBN_SALTY (SWALL:P26403) (314 aa) fasta scores: E(): 2.1e-53, 45.24% id in 305 aa, and to Actinobacillus pleuropneumoniae putative rhamnosyl transferase SWALL:Q9EYG7 (EMBL:AF329452) (303 aa) fasta scores: E(): 2.9e-54, 47.52% id in 303 aa.
       0.441
nahO
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
       0.408
nahM
4-hydroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
       0.408
ECA1430
Similar to Cicer arietinum dTDP-glucose 4-6-dehydratase SWALL:Q9SMJ5 (EMBL:AJ275318) (346 aa) fasta scores: E(): 1.7e-10, 28.52% id in 284 aa, and to Leptospira interrogans dTDP-glucose 4,6-dehydratase RfbB4 or la1661 SWALL:AAN48860 (EMBL:AE011344) (369 aa) fasta scores: E(): 1.2e-09, 28.67% id in 279 aa.
       0.408
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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