STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbNSimilar to Salmonella typhimurium o antigen biosynthesis rhamnosyltransferase RfbN or stm2085 SWALL:RFBN_SALTY (SWALL:P26403) (314 aa) fasta scores: E(): 2.1e-53, 45.24% id in 305 aa, and to Actinobacillus pleuropneumoniae putative rhamnosyl transferase SWALL:Q9EYG7 (EMBL:AF329452) (303 aa) fasta scores: E(): 2.9e-54, 47.52% id in 303 aa. (305 aa)    
Predicted Functional Partners:
rfbM
Similar to Escherichia coli mannose-1-phosphate guanylyltransferase ManC or CpsB or RfbM or b2049 SWALL:MANC_ECOLI (SWALL:P24174) (478 aa) fasta scores: E(): 2.1e-114, 60.88% id in 473 aa, and to Shigella flexneri mannose-1-phosphate guanyltransferase CpsB_1 or sf2112 SWALL:AAN43651 (EMBL:AE015227) (478 aa) fasta scores: E(): 5.5e-115, 61.31% id in 473 aa; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.928
rfbP
Similar to Salmonella typhimurium undecaprenyl-phosphate galactosephosphotransferase RfbP or stm2082 SWALL:RFBP_SALTY (SWALL:P26406) (476 aa) fasta scores: E(): 3e-129, 64.65% id in 464 aa, and to Erwinia amylovora UDP-galactose-lipid carrier transferase amsG SWALL:AMSG_ERWAM (SWALL:Q46628) (477 aa) fasta scores: E(): 2.8e-131, 66.3% id in 466 aa.
 
  
 0.872
wcaJ
Putative capsular polysaccharide biosynthesis protein; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa.
 
  
 0.845
rfbK
Phosphomannomutase; Similar to Escherichia coli phosphomannomutase ManB or RfbK or RfbK2 SWALL:RFK9_ECOLI (SWALL:P37755) (456 aa) fasta scores: E(): 8.5e-137, 74.34% id in 456 aa.
  
  
 0.742
wza
Putative polysaccharide export protein; Similar to Escherichia coli, and Escherichia coli O157:H7 putative polysaccharide export protein Wza precursor Wza or b2062 or z3227 or ecs2867 SWALL:WZA_ECOLI (SWALL:P76388) (379 aa) fasta scores: E(): 3.3e-105, 68.86% id in 379 aa.
  
  
 0.669
rfbC
dTDP-6-deoxy-D-glucose-3,5 epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.658
rfbU
Putative glycosyl transferase; Similar to Salmonella typhimurium RfbU protein RfbU or stm2086 SWALL:RFBU_SALTY (SWALL:P26402) (353 aa) fasta scores: E(): 2.8e-40, 45.65% id in 357 aa, and to Salmonella typhi putative glycosyltransferase RfbU or sty2295 SWALL:Q8Z5I8 (EMBL:AL627273) (353 aa) fasta scores: E(): 2.8e-40, 45.93% id in 357 aa.
  
  
 0.637
ECA0501
Similar to Vibrio vulnificus polysaccharide export-related protein vv12304 SWALL:AAO10680 (EMBL:AE016804) (174 aa) fasta scores: E(): 5.2e-31, 53.61% id in 166 aa, and to Brucella suis capsule polysaccharide export protein, putative br0783 SWALL:AAN29712 (EMBL:AE014383) (195 aa) fasta scores: E(): 5.5e-18, 37.91% id in 182 aa.
  
  
 0.629
ECA0502
Putative capsulatr polysaccharide biosynthesis protein; Similar to Rhizobium leguminosarum exopolysaccharide polymerization protein PssP SWALL:O85453 (EMBL:AF067140) (746 aa) fasta scores: E(): 8.1e-10, 23.42% id in 730 aa, and to Vibrio cholerae exopolysaccharide biosynthesis protein, putative vc0937 SWALL:Q9KTG5 (EMBL:AE004176) (737 aa) fasta scores: E(): 1.4e-44, 28.87% id in 717 aa.
  
  
 0.572
rfbX
Similar to Salmonella typhi putative O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.3e-41, 33.25% id in 418 aa, and to Yersinia pseudotuberculosis putative O-antigen export protein RfbX SWALL:RFBX_YERPS (SWALL:Q05347) (437 aa) fasta scores: E(): 3.6e-33, 35.66% id in 429 aa.
  
  
 0.562
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.