STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1445Putative membrane protein; Similar to Vibrio parahaemolyticus hypothetical protein vp0218 SWALL:BAC58481 (EMBL:AP005073) (72 aa) fasta scores: E(): 0.015, 48.71% id in 78 aa, and to Vibrio vulnificus hypothetical protein vv10787 SWALL:Q8DE18 (EMBL:AE016799) (86 aa) fasta scores: E(): 0.58, 48.91% id in 92 aa. (82 aa)    
Predicted Functional Partners:
ECA1446
Putative lipoprotein; Similar to Vibrio cholerae DNA for otn region genes OtnE SWALL:Q56656 (EMBL:X90547) (229 aa) fasta scores: E(): 1.1e-22, 33.64% id in 211 aa, and to Shigella flexneri orf, conserved hypothetical protein yjbf or sf4178 SWALL:AAN45599 (EMBL:AE015426) (222 aa) fasta scores: E(): 4.3e-20, 34.52% id in 223 aa.
       0.561
ECA1447
Putative exported protein; Similar to Escherichia coli hypothetical protein ymcb precursor ymcb or b0985 SWALL:YMCB_ECOLI (SWALL:P75883) (248 aa) fasta scores: E(): 3.6e-08, 31% id in 258 aa, and to Shigella flexneri orf, conserved hypothetical protein ymcb or sf0987 SWALL:AAN42615 (EMBL:AE015127) (248 aa) fasta scores: E(): 3.6e-08, 32.04% id in 259 aa.
       0.554
ECA1448
Putative exported protein; Similar to Shigella flexneri orf, conserved hypothetical protein yjbh or sf4176 SWALL:AAN45597 (EMBL:AE015426) (698 aa) fasta scores: E(): 1e-142, 52.89% id in 673 aa, and to Escherichia coli hypothetical lipoprotein yjbh precursor yjbh or b4029 SWALL:YJBH_ECOLI (SWALL:P32689) (698 aa) fasta scores: E(): 5.8e-142, 53.04% id in 673 aa.
       0.554
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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