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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1450Putative protease; Similar to Bacillus subtilis kumamolysin kumA SWALL:Q8RR56 (EMBL:AB070740) (572 aa) fasta scores: E(): 6.7e-73, 42.67% id in 539 aa, and to Alicyclobacillus sendaienensis collagenolytic serine-carboxyl proteinase precursor AscP SWALL:BAC41257 (EMBL:AB085855) (553 aa) fasta scores: E(): 3.3e-72, 43.59% id in 539 aa. (539 aa)    
Predicted Functional Partners:
ECA1449
Putative chorismate mutase; Similar to Erwinia herbicola monofunctional chorismate mutase precursor AroQ SWALL:CHMU_ERWHE (SWALL:P42517) (181 aa) fasta scores: E(): 1.2e-18, 38.88% id in 180 aa, and to Yersinia pestis putative chorismate mutase ypo1353 or y2828 SWALL:Q8ZGE8 (EMBL:AJ414147) (186 aa) fasta scores: E(): 5.3e-17, 34.83% id in 178 aa.
       0.714
hoxN
Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SWALL:HOXN_ALCEU (SWALL:P23516) (351 aa) fasta scores: E(): 1.2e-68, 54.63% id in 324 aa, and to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HupN or bll6949 SWALL:HUPN_BRAJA (SWALL:Q45247) (381 aa) fasta scores: E(): 1.8e-62, 51.91% id in 314 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.611
ECA1451
Probable glycosyl hydrolase; Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.3e-55, 42.14% id in 484 aa, and to Streptomyces sp beta-glucosidase bgl3 SWALL:Q59976 (EMBL:Z29625) (479 aa) fasta scores: E(): 8.1e-57, 38.13% id in 472 aa; Belongs to the glycosyl hydrolase 1 family.
       0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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