Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ECA1454 | ECA1455 | ECA1454 | ECA1455 | Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. | Similar to Salmonella typhimurium putative transcriptional regulator stm4417 SWALL:Q8ZK65 (EMBL:AE008907) (277 aa) fasta scores: E(): 1.2e-62, 65.29% id in 268 aa, and to Yersinia pestis hypothetical protein ypo2576 or y1145 SWALL:Q8ZDJ0 (EMBL:AJ414152) (284 aa) fasta scores: E(): 4.3e-82, 79.93% id in 284 aa. | 0.627 |
ECA1454 | ECA1788 | ECA1454 | ECA1788 | Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. | Similar to Yersinia pestis hypothetical protein ypo1588 or y1744 SWALL:AAM85313 (EMBL:AJ414149) (95 aa) fasta scores: E(): 1.1e-15, 51.68% id in 89 aa, and to Neisseria meningitidis hypothetical protein Nma1764 SWALL:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.4e-12, 43.33% id in 90 aa. | 0.461 |
ECA1454 | prtW | ECA1454 | ECA2785 | Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. | Metalloprotease; Similar to Pectobacterium carotovorum subsp. carotovorum metalloprotease PrtW SWALL:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 4.7e-142, 84.51% id in 478 aa, and to Erwinia chrysanthemi secreted protease C precursor PrtC SWALL:PRTX_ERWCH (SWALL:P19144) (478 aa) fasta scores: E(): 5.8e-116, 66.03% id in 471 aa. | 0.540 |
ECA1455 | ECA1454 | ECA1455 | ECA1454 | Similar to Salmonella typhimurium putative transcriptional regulator stm4417 SWALL:Q8ZK65 (EMBL:AE008907) (277 aa) fasta scores: E(): 1.2e-62, 65.29% id in 268 aa, and to Yersinia pestis hypothetical protein ypo2576 or y1145 SWALL:Q8ZDJ0 (EMBL:AJ414152) (284 aa) fasta scores: E(): 4.3e-82, 79.93% id in 284 aa. | Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. | 0.627 |
ECA1788 | ECA1454 | ECA1788 | ECA1454 | Similar to Yersinia pestis hypothetical protein ypo1588 or y1744 SWALL:AAM85313 (EMBL:AJ414149) (95 aa) fasta scores: E(): 1.1e-15, 51.68% id in 89 aa, and to Neisseria meningitidis hypothetical protein Nma1764 SWALL:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.4e-12, 43.33% id in 90 aa. | Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. | 0.461 |
prtW | ECA1454 | ECA2785 | ECA1454 | Metalloprotease; Similar to Pectobacterium carotovorum subsp. carotovorum metalloprotease PrtW SWALL:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 4.7e-142, 84.51% id in 478 aa, and to Erwinia chrysanthemi secreted protease C precursor PrtC SWALL:PRTX_ERWCH (SWALL:P19144) (478 aa) fasta scores: E(): 5.8e-116, 66.03% id in 471 aa. | Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. | 0.540 |