Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1454Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa. (95 aa)    
Predicted Functional Partners:
ECA1455
Similar to Salmonella typhimurium putative transcriptional regulator stm4417 SWALL:Q8ZK65 (EMBL:AE008907) (277 aa) fasta scores: E(): 1.2e-62, 65.29% id in 268 aa, and to Yersinia pestis hypothetical protein ypo2576 or y1145 SWALL:Q8ZDJ0 (EMBL:AJ414152) (284 aa) fasta scores: E(): 4.3e-82, 79.93% id in 284 aa.
       0.625
prtW
Metalloprotease; Similar to Pectobacterium carotovorum subsp. carotovorum metalloprotease PrtW SWALL:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 4.7e-142, 84.51% id in 478 aa, and to Erwinia chrysanthemi secreted protease C precursor PrtC SWALL:PRTX_ERWCH (SWALL:P19144) (478 aa) fasta scores: E(): 5.8e-116, 66.03% id in 471 aa.
  
     0.540
ECA1788
Similar to Yersinia pestis hypothetical protein ypo1588 or y1744 SWALL:AAM85313 (EMBL:AJ414149) (95 aa) fasta scores: E(): 1.1e-15, 51.68% id in 89 aa, and to Neisseria meningitidis hypothetical protein Nma1764 SWALL:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.4e-12, 43.33% id in 90 aa.
  
     0.461
polA
Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
    0.413
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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