STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idhASimilar to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA or rb1194 or smb20899 SWALL:MI2D_RHIME (SWALL:O68965) (330 aa) fasta scores: E(): 4.2e-59, 49.84% id in 323 aa, and to Brucella melitensis myo-inositol 2-dehydrogenase bmeii0574 SWALL:Q8YCF6 (EMBL:AE009694) (334 aa) fasta scores: E(): 1.7e-60, 51.07% id in 325 aa. (328 aa)    
Predicted Functional Partners:
mocC
Similar to Rhizobium meliloti rhizopine catabolism protein MocC mocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.3e-63, 53.58% id in 293 aa, and to Bacillus subtilis IolE protein IolE e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.1e-37, 37.67% id in 284 aa.
 
 
 0.995
suhB
Inositol-1-monophosphatase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 inositol-1-monophosphatase SuhB or SsyA or b2533 or c3059 or z3800 or ecs3399 SWALL:SUHB_ECOLI (SWALL:P22783) (267 aa) fasta scores: E(): 2.4e-90, 84.64% id in 267 aa.
    
 0.945
ECA0653
Putative oxidoreductase; Similar to Escherichia coli O6 hypothetical oxidoreductase YgjR SWALL:AAN82290 (EMBL:AE016767) (334 aa) fasta scores: E(): 2.7e-91, 70.76% id in 325 aa.
  
  
  0.896
ECA1463
Putative carbohydrate kinase; Similar to Bacillus subtilis protein IolC or e83C SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 1e-21, 31.64% id in 335 aa, and to Yersinia pestis putative carbohydrate kinase ypo2585 or y1153 SWALL:Q8ZDI3 (EMBL:AJ414152) (656 aa) fasta scores: E(): 3.8e-208, 78.44% id in 631 aa.
 
 
 0.866
ECA1465
Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium putative inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa.
 
  
 0.859
ECA1457
Similar to Yersinia pestis putative thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa; Belongs to the TPP enzyme family.
 
  
 0.836
ECA1459
Putative sugar ABC transporter, periplasmic protein; Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsP or stm3884 or sty3894 SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 6.8e-24, 35.95% id in 267 aa, and to Yersinia pestis putative sugar-binding periplasmic protein ypo2581 SWALL:Q8ZDI7 (EMBL:AJ414152) (309 aa) fasta scores: E(): 6.5e-87, 80.76% id in 312 aa.
  
    0.576
ECA1398
Putativeoxidoreductase; Similar to Bacillus halodurans hypothetical protein Bh0710 bh0710 SWALL:Q9KEY9 (EMBL:AP001509) (388 aa) fasta scores: E(): 9e-27, 28.78% id in 396 aa, and to Streptomyces coelicolor putative oxidoreductase sco6988 or sc8f11.14C SWALL:Q9KZG4 (EMBL:AL939129) (387 aa) fasta scores: E(): 1e-20, 29.23% id in 390 aa.
  
     0.568
lysS
Lysyl tRNA synthetase; Similar to Escherichia coli, and Escherichia coli O6 lysyl-tRNA synthetase LysS SWALL:SYK1_ECOLI (SWALL:P13030) (504 aa) fasta scores: E(): 1.9e-174, 85.71% id in 504 aa; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.538
ECA1462
Probable oxidoreductase; Similar to Yersinia pestis hypothetical protein Ypo2584 SWALL:Q8ZDI4 (EMBL:AJ414152) (377 aa) fasta scores: E(): 1.1e-117, 76.59% id in 376 aa, and to Rhizobium meliloti putative oxidoreductase protein r00356 or smc01163 SWALL:Q92SL5 (EMBL:AL591783) (376 aa) fasta scores: E(): 6.5e-61, 45.92% id in 368 aa.
 
    
0.498
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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