STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1462Probable oxidoreductase; Similar to Yersinia pestis hypothetical protein Ypo2584 SWALL:Q8ZDI4 (EMBL:AJ414152) (377 aa) fasta scores: E(): 1.1e-117, 76.59% id in 376 aa, and to Rhizobium meliloti putative oxidoreductase protein r00356 or smc01163 SWALL:Q92SL5 (EMBL:AL591783) (376 aa) fasta scores: E(): 6.5e-61, 45.92% id in 368 aa. (377 aa)    
Predicted Functional Partners:
mocC
Similar to Rhizobium meliloti rhizopine catabolism protein MocC mocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.3e-63, 53.58% id in 293 aa, and to Bacillus subtilis IolE protein IolE e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.1e-37, 37.67% id in 284 aa.
  
 0.971
ECA1465
Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium putative inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa.
 
  
 0.942
ECA1463
Putative carbohydrate kinase; Similar to Bacillus subtilis protein IolC or e83C SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 1e-21, 31.64% id in 335 aa, and to Yersinia pestis putative carbohydrate kinase ypo2585 or y1153 SWALL:Q8ZDI3 (EMBL:AJ414152) (656 aa) fasta scores: E(): 3.8e-208, 78.44% id in 631 aa.
  
 0.939
ECA1457
Similar to Yersinia pestis putative thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa; Belongs to the TPP enzyme family.
 
  
 0.885
ECA1396
Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein atu4376 or agr_l_982 SWALL:Q8U7S3 (EMBL:AE009366) (284 aa) fasta scores: E(): 2e-44, 43.5% id in 285 aa, and to Rhizobium meliloti hypothetical protein r01924 or smc04254 SWALL:Q92P69 (EMBL:AL591788) (253 aa) fasta scores: E(): 6.9e-22, 32.63% id in 239 aa.
 
  
 0.774
ECA1461
Putative sugar ABC transporter, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 8.2e-43, 43.93% id in 330 aa, and to Yersinia pestis sugar transport system permease protein ypo2583 or rbsc or y1151 SWALL:Q8ZDI5 (EMBL:AJ414152) (342 aa) fasta scores: E(): 8.4e-110, 87.64% id in 340 aa.
  
    0.652
ECA1399
Similar to Agrobacterium tumefaciens hypothetical protein atu4374 or agr_l_986 SWALL:Q8U7S5 (EMBL:AE009366) (349 aa) fasta scores: E(): 4.3e-104, 67.42% id in 350 aa, and to Caulobacter crescentus hypothetical protein Cc1631 SWALL:Q9A7T9 (EMBL:AE005838) (351 aa) fasta scores: E(): 5.1e-102, 68.09% id in 351 aa.
 
  
 0.637
ECA1460
Putative sugar ABC transporter, ATP-binding protein; Similar to Yersinia pestis ATP-binding component of D-ribose high-affinity transport system RbsA or y1150 SWALL:AAM84727 (EMBL:AE013719) (515 aa) fasta scores: E(): 1.9e-156, 80.19% id in 515 aa, and to Caulobacter crescentus sugar ABC transporter, ATP-binding protein cc0860 SWALL:Q9A9V1 (EMBL:AE005763) (515 aa) fasta scores: E(): 5.3e-94, 53.72% id in 510 aa.
  
  
 0.632
ECA2140
Putative oxidoreductase; Similar to Oceanobacillus iheyensis hypothetical protein ob3401 SWALL:BAC15357 (EMBL:AP004604) (363 aa) fasta scores: E(): 3.5e-64, 49.69% id in 328 aa, and to Agrobacterium tumefaciens oxidoreductase atu3965 or agr_l_1780 SWALL:Q8U8X3 (EMBL:AE009327) (338 aa) fasta scores: E(): 4.3e-62, 50.75% id in 333 aa.
  
     0.540
lysS
Lysyl tRNA synthetase; Similar to Escherichia coli, and Escherichia coli O6 lysyl-tRNA synthetase LysS SWALL:SYK1_ECOLI (SWALL:P13030) (504 aa) fasta scores: E(): 1.9e-174, 85.71% id in 504 aa; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.498
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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