STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1470Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein fbpa or atu0407 or agr_c_715 SWALL:Q8UI91 (EMBL:AE009011) (351 aa) fasta scores: E(): 5.4e-84, 64.18% id in 349 aa, and to Brucella melitensis iron bmeii0584 SWALL:Q8YCE7 (EMBL:AE009695) (338 aa) fasta scores: E(): 1.2e-83, 64.93% id in 328 aa. (349 aa)    
Predicted Functional Partners:
ECA1469
Similar to Brucella suis iron compound ABC transporter, permease protein, putative bra0699 SWALL:AAN33884 (EMBL:AE014565) (589 aa) fasta scores: E(): 1.3e-97, 51.53% id in 553 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein fbpa3 or atu0408 or agr_c_717 SWALL:Q8UI90 (EMBL:AE009011) (558 aa) fasta scores: E(): 1.3e-95, 52.94% id in 527 aa.
 
 
 0.989
ECA1468
Similar to Pseudomonas putida ABC transporter, ATP-binding protein, putative pp1078 SWALL:AAN66703 (EMBL:AE016778) (369 aa) fasta scores: E(): 1.5e-40, 54.5% id in 222 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 1.5e-37, 54.83% id in 217 aa.
 
 
 0.968
ECA3331
ABC transporter, permease protein; Similar to Vibrio cholerae iron vc0609 SWALL:Q9KUB4 (EMBL:AE004146) (541 aa) fasta scores: E(): 2.7e-75, 41.11% id in 540 aa, and to Pasteurella multocida fbpb fbpb or pm0050 SWALL:Q9CPI8 (EMBL:AE006038) (552 aa) fasta scores: E(): 6.1e-78, 41.3% id in 552 aa.
 
 
 0.957
sfuB
Similar to Serratia marcescens iron(III)-transport system permease protein SfuB SWALL:SFUB_SERMA (SWALL:P21409) (527 aa) fasta scores: E(): 7.3e-141, 71.29% id in 526 aa, and to Yersinia pestis iron(III)-transport system permease protein SfuB or ypo2959 SWALL:Q8ZCM3 (EMBL:AJ414154) (528 aa) fasta scores: E(): 2.2e-139, 70.61% id in 524 aa.
 
 
 0.948
ECA3330
ATP transporter ATP-binding protein; Similar to Pasteurella haemolytica ATPase FbpC SWALL:Q9ZHY0 (EMBL:AF047427) (336 aa) fasta scores: E(): 8.5e-53, 44.57% id in 341 aa, and to Vibrio vulnificus ABC-type spermidine/putrescine transport system, ATPase component vv11663 SWALL:AAO10080 (EMBL:AE016802) (342 aa) fasta scores: E(): 1.3e-51, 44.14% id in 333 aa; Belongs to the ABC transporter superfamily.
 
 
 0.825
sfuC
iron(III)-transport ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.819
afuC
Ferric ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
  
 
 0.698
ECA1511
Putative exported protein; Similar to Yersinia pestis 102 kbases unstable region: from 1 to 119443 ypo1942 SWALL:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 2.4e-63, 86.78% id in 174 aa, and to Pasteurella multocida hypothetical protein Pm0452 SWALL:Q9CNH9 (EMBL:AE006081) (173 aa) fasta scores: E(): 1.1e-57, 79.06% id in 172 aa.
   
  
 0.588
ECA1466
Conserved hypothetical protein; Similar to Enterobacter aerogenes KluB SWALL:Q93KC5 (EMBL:U67194) (104 aa) fasta scores: E(): 1.4e-21, 58.41% id in 101 aa, and to Pseudomonas sp. hypothetical 11.6 kDa protein orf1 SWALL:Q937D2 (EMBL:U66917) (104 aa) fasta scores: E(): 8.5e-22, 59.4% id in 101 aa.
       0.525
ECA1467
Conserved hypothetical protein; Similar to Enterobacter aerogenes KluA kluA SWALL:Q93KC6 (EMBL:U67194) (89 aa) fasta scores: E(): 6e-17, 60.92% id in 87 aa, and to Pseudomonas sp. hypothetical 10.2 kDa protein orf2 SWALL:Q937D1 (EMBL:U66917) (93 aa) fasta scores: E(): 6.3e-17, 60.92% id in 87 aa.
       0.525
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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