STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1479Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu5325 or agr_pat_467 SWALL:Q8UJZ9 (EMBL:AE008954) (300 aa) fasta scores: E(): 6.9e-83, 71.33% id in 300 aa, and to Rhizobium loti transcriptional regulator mll2784 SWALL:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): 1.2e-37, 39.11% id in 294 aa; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
sftR
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.750
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.737
sftR-2
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.730
nac
Partial CDS. Similar to the N-terminal region of Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.4e-23, 77.77% id in 90 aa.
  
     0.718
ECA2259
LysR-family transcriptional regulator; Similar to Salmonella typhi putative regulatory protein sty1578 SWALL:Q8Z6X7 (EMBL:AL627270) (299 aa) fasta scores: E(): 3.5e-66, 60.81% id in 296 aa, and to Yersinia pestis putative transcriptional regulator LysR-type y2109 SWALL:AAM85672 (EMBL:AE013813) (307 aa) fasta scores: E(): 1e-72, 69.61% id in 283 aa.
  
     0.667
hdfR
LysR-family transcriptional regulator; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.642
nac-2
Similar to Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 6.6e-56, 52.44% id in 307 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.636
ECA2642
Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.629
ECA3561
Similar to Streptomyces antibioticus transcriptional regulatory protein AraB AbaB SWALL:ARAB_STRAT (SWALL:P52659) (301 aa) fasta scores: E(): 4e-16, 32.78% id in 302 aa, and to Streptomyces coelicolor putative LysR-family transcriptional regulator sco6801 or sc1a2.10 SWALL:Q9L231 (EMBL:AL939129) (300 aa) fasta scores: E(): 1.2e-09, 30.9% id in 288 aa.
  
     0.627
ECA1480
Similar to Streptomyces avermitilis putative zinc-binding oxidoreductase SWALL:BAC68386 (EMBL:AP005023) (331 aa) fasta scores: E(): 1e-66, 58.55% id in 333 aa, and to Agrobacterium tumefaciens zinc-binding oxidoreductase atu5324 or agr_pat_466 SWALL:Q8UK00 (EMBL:AE008954) (353 aa) fasta scores: E(): 4.3e-92, 73.73% id in 335 aa.
 
     0.601
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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