STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1483Putative NAD(P)H oxidoreductase; Similar to Klebsiella aerogenes KefC regulator YabF SWALL:Q9X755 (EMBL:AJ242913) (177 aa) fasta scores: E(): 4.1e-15, 36.36% id in 176 aa, and to Escherichia coli, and Escherichia coli O6 putative NAD(P)H oxidoreductase YabF or b0046 or c0056 SWALL:YABF_ECOLI (SWALL:P31577) (176 aa) fasta scores: E(): 1e-17, 46.47% id in 142 aa. (191 aa)    
Predicted Functional Partners:
kefB
Glutathione-regulated potassium-efflux system protein; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
 
 
 0.906
ECA1484
Similar to Yersinia pestis hypothetical protein Ypo1733 SWALL:Q8ZFH6 (EMBL:AJ414150) (94 aa) fasta scores: E(): 9.6e-06, 33.33% id in 87 aa, and to Rhizobium loti hypothetical protein Mlr3009 SWALL:Q98H68 (EMBL:AP003000) (101 aa) fasta scores: E(): 0.00016, 37.2% id in 86 aa.
       0.746
mdaB
Putative modulator of drug activity B; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 modulator of drug activity B MdaB or mda66 or b3028 or c3768 or z4379 or ecs3910 SWALL:MDAB_ECOLI (SWALL:P40717) (193 aa) fasta scores: E(): 8.6e-61, 70.83% id in 192 aa, and to Yersinia pestis putative modulator of drug activity MdaB or ypo0670 or y3509 SWALL:Q8ZI44 (EMBL:AJ414144) (194 aa) fasta scores: E(): 2.1e-61, 74.46% id in 188 aa.
 
   
 0.550
ECA1482
Similar to Rhizobium loti transcriptional regulator mlr0648 SWALL:Q98MB4 (EMBL:AP002995) (311 aa) fasta scores: E(): 4.8e-28, 31.95% id in 291 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa1328 SWALL:Q9I416 (EMBL:AE004562) (302 aa) fasta scores: E(): 3.5e-27, 34.72% id in 288 aa; Belongs to the LysR transcriptional regulatory family.
       0.528
ECA1485
Putative lipoprotein; Similar to Fusobacterium nucleatum hypothetical cytosolic protein Fn1347 SWALL:Q8RDZ4 (EMBL:AE010639) (218 aa) fasta scores: E(): 2.7e-21, 31.77% id in 214 aa, and to Rhizobium meliloti hypothetical protein ra0291 or sma0558 SWALL:Q930A7 (EMBL:AE007221) (170 aa) fasta scores: E(): 6.4e-06, 34.94% id in 83 aa.
       0.478
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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