STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacISimilar to Escherichia coli lactose operon repressor LacI or b0345 SWALL:LACI_ECOLI (SWALL:P03023) (360 aa) fasta scores: E(): 1.6e-68, 52.11% id in 355 aa. (358 aa)    
Predicted Functional Partners:
gntR-2
Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa.
  
   
 0.870
lacZ
Beta-galactosidase; Similar to Escherichia coli beta-galactosidase LacZ or b0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 0, 64.84% id in 1024 aa; Belongs to the glycosyl hydrolase 2 family.
     
 0.707
rbsD
High affinity ribose transport protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.613
udk
Uridine kinase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri uridine kinase Udk or b2066 or c2593 or z3234 or ecs2873 or sf2130 SWALL:URK_ECOLI (SWALL:P31218) (213 aa) fasta scores: E(): 3e-70, 87.32% id in 213 aa.
     
 0.595
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 
 0.592
proY
Similar to Salmonella typhimurium proline-specific permease ProY or stm0400 SWALL:PROY_SALTY (SWALL:P37460) (456 aa) fasta scores: E(): 7.4e-145, 82.78% id in 453 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 proline-specific permease ProY or b0402 or c0512 or z0500 or ecs0452 SWALL:PROY_ECOLI (SWALL:P77327) (457 aa) fasta scores: E(): 4.3e-145, 82.56% id in 453 aa.
      
 0.585
crp
Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa.
    
 
 0.577
xylR
Xylose operon regulatory protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 xylose operon regulatory protein XylR SWALL:XYLR_ECOLI (SWALL:P37390) (392 aa) fasta scores: E(): 2.5e-127, 81.02% id in 390 aa.
      
 0.545
scrY
Putative sucrose porin; Similar to Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 1.3e-125, 63.33% id in 510 aa, and to Erwinia amylovora porin ScrY SWALL:Q9F4A0 (EMBL:AJ250722) (514 aa) fasta scores: E(): 8.5e-118, 62.57% id in 521 aa.
      
 0.541
araC
Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SWALL:ARAC_ERWCH (SWALL:P07642) (310 aa) fasta scores: E(): 3.7e-129, 97.41% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 arabinose operon regulatory protein AraC or b0064 or z0073 or ecs0068 SWALL:ARAC_ECOLI (SWALL:P03021) (292 aa) fasta scores: E(): 1.2e-62, 57.09% id in 289 aa.
      
 0.535
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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