Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
afuAABC transporter iron-binding protein; Similar to Actinobacillus pleuropneumoniae AfuA protein afuA SWALL:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 1.4e-97, 69.56% id in 345 aa, and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA or z0460 or ecs0415 SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 4.2e-115, 84.01% id in 344 aa. (344 aa)    
Predicted Functional Partners:
afuC
Ferric ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.971
sfuB
Similar to Serratia marcescens iron(III)-transport system permease protein SfuB SWALL:SFUB_SERMA (SWALL:P21409) (527 aa) fasta scores: E(): 7.3e-141, 71.29% id in 526 aa, and to Yersinia pestis iron(III)-transport system permease protein SfuB or ypo2959 SWALL:Q8ZCM3 (EMBL:AJ414154) (528 aa) fasta scores: E(): 2.2e-139, 70.61% id in 524 aa.
 
 
 0.959
afuB
Ferric ABC transporter permease protein; Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 8.6e-167, 64.73% id in 672 aa, and to Escherichia coli O157:H7 putative permease component of transport system for ferric iron AfuB or z0459 or ecs0414 SWALL:Q8X5J2 (EMBL:AE005215) (692 aa) fasta scores: E(): 2.1e-217, 81.21% id in 692 aa.
 
  
  0.954
ECA3330
ATP transporter ATP-binding protein; Similar to Pasteurella haemolytica ATPase FbpC SWALL:Q9ZHY0 (EMBL:AF047427) (336 aa) fasta scores: E(): 8.5e-53, 44.57% id in 341 aa, and to Vibrio vulnificus ABC-type spermidine/putrescine transport system, ATPase component vv11663 SWALL:AAO10080 (EMBL:AE016802) (342 aa) fasta scores: E(): 1.3e-51, 44.14% id in 333 aa; Belongs to the ABC transporter superfamily.
  
 
 0.913
ECA1469
Similar to Brucella suis iron compound ABC transporter, permease protein, putative bra0699 SWALL:AAN33884 (EMBL:AE014565) (589 aa) fasta scores: E(): 1.3e-97, 51.53% id in 553 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein fbpa3 or atu0408 or agr_c_717 SWALL:Q8UI90 (EMBL:AE009011) (558 aa) fasta scores: E(): 1.3e-95, 52.94% id in 527 aa.
 
 
 0.842
ECA3331
ABC transporter, permease protein; Similar to Vibrio cholerae iron vc0609 SWALL:Q9KUB4 (EMBL:AE004146) (541 aa) fasta scores: E(): 2.7e-75, 41.11% id in 540 aa, and to Pasteurella multocida fbpb fbpb or pm0050 SWALL:Q9CPI8 (EMBL:AE006038) (552 aa) fasta scores: E(): 6.1e-78, 41.3% id in 552 aa.
 
 
 0.837
ECA2134
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 7.6e-08, 23.3% id in 266 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2377 SWALL:Q9I1A2 (EMBL:AE004664) (424 aa) fasta scores: E(): 8.8e-43, 39.38% id in 325 aa.
  
  
 0.741
ECA1345
ABC transporter permease protein; Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 2e-26, 24.36% id in 550 aa, and to Pasteurella multocida AfuB afub_2 or pm1455 SWALL:Q9CKZ5 (EMBL:AE006182) (564 aa) fasta scores: E(): 5.6e-41, 28.39% id in 553 aa.
 
  
  0.740
sfuC
iron(III)-transport ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.728
uhpC
Similar to Escherichia coli regulatory protein UhpC or b3667 SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 3.6e-99, 53.34% id in 433 aa, and to Yersinia pestis putative regulatory protein UhpC or ypo4007 SWALL:Q8ZA15 (EMBL:AJ414160) (443 aa) fasta scores: E(): 3.8e-103, 56.11% id in 417 aa.
 
  
 0.701
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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