STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1501Similar to Escherichia coli hypothetical transcriptional regulator yjie or b4327 SWALL:YJIE_ECOLI (SWALL:P39376) (303 aa) fasta scores: E(): 3.1e-55, 50% id in 294 aa, and to Shigella flexneri putative transcriptional regulator LysR-type yjie or sf4191 SWALL:AAN45612 (EMBL:AE015427) (303 aa) fasta scores: E(): 1.6e-54, 49.66% id in 294 aa. (299 aa)    
Predicted Functional Partners:
ECA2642
Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.651
ECA3202
LysR-family transcriptional regulator; Similar to Ralstonia solanacearum probable DNA-binding transcriptional regulatory transcription regulator protein rsc1196 or rs05728 SWALL:Q8Y048 (EMBL:AL646063) (306 aa) fasta scores: E(): 3.9e-42, 42.76% id in 297 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.7e-38, 39.51% id in 291 aa.
  
     0.642
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.638
ECA2259
LysR-family transcriptional regulator; Similar to Salmonella typhi putative regulatory protein sty1578 SWALL:Q8Z6X7 (EMBL:AL627270) (299 aa) fasta scores: E(): 3.5e-66, 60.81% id in 296 aa, and to Yersinia pestis putative transcriptional regulator LysR-type y2109 SWALL:AAM85672 (EMBL:AE013813) (307 aa) fasta scores: E(): 1e-72, 69.61% id in 283 aa.
  
     0.637
ECA4427
LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.634
ECA1085
LysR-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsp1267 or rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 7.6e-52, 47.27% id in 294 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.4e-46, 44.71% id in 293 aa.
  
     0.589
nac
Partial CDS. Similar to the N-terminal region of Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.4e-23, 77.77% id in 90 aa.
  
     0.582
ECA1500
Probable aspartate racemase; Similar to Streptococcus thermophilus aspartate racemase SWALL:RACD_STRTR (SWALL:P29079) (243 aa) fasta scores: E(): 1.2e-13, 31.33% id in 233 aa, and to Erwinia carotovora hypothetical protein in pnlA 3'region SWALL:YPNL_ERWCA (SWALL:P32968) (150 aa) fasta scores: E(): 4.2e-52, 93.33% id in 150 aa; Belongs to the aspartate/glutamate racemases family.
 
    0.578
budR
Similar to Klebsiella terrigena bud operon transcriptional regulator BudR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 1.3e-47, 48.44% id in 289 aa, and to Salmonella typhimurium putative transcriptional regulator StmR SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 2.6e-35, 37.71% id in 289 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.569
nrfG
Similar to Escherichia coli formate-dependent nitrite reductase complex NrfG subunit NrfG or b4076 SWALL:NRFG_ECOLI (SWALL:P32712) (198 aa) fasta scores: E(): 3.6e-35, 55.78% id in 190 aa.
  
     0.555
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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