STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citM-2Citrate transporter; Similar to Bacillus subtilis mg citM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 1.4e-80, 53.24% id in 432 aa, and to Bacillus subtilis citrate transporter CitN or CitH or n15cR SWALL:CITN_BACSU (SWALL:P42308) (426 aa) fasta scores: E(): 3.2e-91, 57.14% id in 434 aa. (437 aa)    
Predicted Functional Partners:
ECA1286
Similar to Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.4e-40, 34.88% id in 450 aa, and to Streptomyces coelicolor hypothetical protein sco4379 or scd10.11 SWALL:Q9K3W5 (EMBL:AL939119) (558 aa) fasta scores: E(): 2.3e-21, 34.24% id in 365 aa.
 
     0.633
ECA1285
Conserved hypothetical protein; Similar to the C-terminal regions of several hypothetical proteins including Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.9e-06, 37% id in 100 aa, and to Mycobacterium tuberculosis hypothetical protein rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 0.00068, 35.29% id in 85 aa.
 
     0.632
ECA3984
Putative sodium:sulfate symporter; Similar to Salmonella typhi possible membrane transport protein sty3340 SWALL:Q8Z3Q1 (EMBL:AL627277) (484 aa) fasta scores: E(): 4e-162, 82.02% id in 484 aa, and to Clostridium acetobutylicum 2-oxoglutarate/malate translocator cac1590 SWALL:Q97IQ0 (EMBL:AE007668) (476 aa) fasta scores: E(): 6.8e-87, 46.57% id in 481 aa.
      
 0.530
ECA1505
Conserved hypothetical protein; Similar to Ralstonia solanacearum probable transcription regulator protein rsp0328 or rs05438 SWALL:Q8XSY9 (EMBL:AL646078) (311 aa) fasta scores: E(): 8.3e-33, 36.86% id in 293 aa, and to Ralstonia solanacearum putative transcription regulator protein rsp0331 or rs00705 SWALL:Q8XSY6 (EMBL:AL646078) (298 aa) fasta scores: E(): 1.4e-29, 35.19% id in 287 aa.
       0.527
ECA0983
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative integral membrane transport protein ygdq or stm3006 or sty3149 SWALL:Q8XES3 (EMBL:AE008838) (237 aa) fasta scores: E(): 2.2e-73, 80.34% id in 234 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ygdq ygdq or b2832 or c3427 or z4150 or ecs3689 SWALL:YGDQ_ECOLI (SWALL:Q46931) (237 aa) fasta scores: E(): 6.5e-73, 79.48% id in 234 aa.
  
  
 0.476
rffG
Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RffG or b3788 SWALL:RFFG_ECOLI (SWALL:P27830) (355 aa) fasta scores: E(): 6.4e-119, 83% id in 353 aa; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
      
 0.469
waaJ
Similar to Escherichia coli lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or b3626 SWALL:RFAJ_ECOLI (SWALL:P27129) (338 aa) fasta scores: E(): 4.4e-63, 49.69% id in 330 aa, and to Salmonella typhimurium lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or stm3717 SWALL:RFAJ_SALTY (SWALL:P19817) (336 aa) fasta scores: E(): 5.6e-66, 53.98% id in 326 aa.
      
 0.468
budC
Acetoin reductase; Similar to Klebsiella terrigena acetoin reductase BudC SWALL:BUDC_KLETE (SWALL:Q04520) (241 aa) fasta scores: E(): 1.3e-51, 69.06% id in 236 aa, and to Klebsiella pneumoniae acetoin reductase BudC SWALL:BUDC_KLEPN (SWALL:Q48436) (256 aa) fasta scores: E(): 1.8e-73, 82.28% id in 254 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.468
citW
Similar to Klebsiella pneumoniae citrate/acetate antiporter CitW SWALL:Q8VS41 (EMBL:AF411142) (454 aa) fasta scores: E(): 1.9e-136, 76.75% id in 456 aa.
      
 0.461
budB
Similar to Klebsiella pneumoniae acetolactate synthase, catabolic budb or ilvK SWALL:ILVB_KLEPN (SWALL:P27696) (559 aa) fasta scores: E(): 6.5e-143, 66% id in 556 aa, and to Klebsiella terrigena acetolactate synthase, catabolic budB SWALL:ILVB_KLETE (SWALL:Q04524) (559 aa) fasta scores: E(): 4.5e-137, 64.15% id in 558 aa; Belongs to the TPP enzyme family.
      
 0.460
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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