STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citM-2Citrate transporter; Similar to Bacillus subtilis mg citM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 1.4e-80, 53.24% id in 432 aa, and to Bacillus subtilis citrate transporter CitN or CitH or n15cR SWALL:CITN_BACSU (SWALL:P42308) (426 aa) fasta scores: E(): 3.2e-91, 57.14% id in 434 aa. (437 aa)    
Predicted Functional Partners:
ECA1286
Similar to Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.4e-40, 34.88% id in 450 aa, and to Streptomyces coelicolor hypothetical protein sco4379 or scd10.11 SWALL:Q9K3W5 (EMBL:AL939119) (558 aa) fasta scores: E(): 2.3e-21, 34.24% id in 365 aa.
 
     0.639
ECA1285
Conserved hypothetical protein; Similar to the C-terminal regions of several hypothetical proteins including Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.9e-06, 37% id in 100 aa, and to Mycobacterium tuberculosis hypothetical protein rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 0.00068, 35.29% id in 85 aa.
 
     0.635
ECA3984
Putative sodium:sulfate symporter; Similar to Salmonella typhi possible membrane transport protein sty3340 SWALL:Q8Z3Q1 (EMBL:AL627277) (484 aa) fasta scores: E(): 4e-162, 82.02% id in 484 aa, and to Clostridium acetobutylicum 2-oxoglutarate/malate translocator cac1590 SWALL:Q97IQ0 (EMBL:AE007668) (476 aa) fasta scores: E(): 6.8e-87, 46.57% id in 481 aa.
      
 0.544
ECA1505
Conserved hypothetical protein; Similar to Ralstonia solanacearum probable transcription regulator protein rsp0328 or rs05438 SWALL:Q8XSY9 (EMBL:AL646078) (311 aa) fasta scores: E(): 8.3e-33, 36.86% id in 293 aa, and to Ralstonia solanacearum putative transcription regulator protein rsp0331 or rs00705 SWALL:Q8XSY6 (EMBL:AL646078) (298 aa) fasta scores: E(): 1.4e-29, 35.19% id in 287 aa.
       0.528
ECA1939
Similar to Escherichia coli O157:H7 putative symport protein z0888 or ecs0758 SWALL:Q8X4W0 (EMBL:AE005251) (426 aa) fasta scores: E(): 2.1e-69, 49.63% id in 413 aa, and to Ralstonia solanacearum putative glutamate symport transmembrane protein rsc1957 or rs03531 SWALL:Q8XY06 (EMBL:AL646067) (428 aa) fasta scores: E(): 2.5e-96, 63.4% id in 429 aa; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.473
gltP
Similar to Escherichia coli proton glutamate symport protein GltP or b4077 SWALL:GLTP_ECOLI (SWALL:P21345) (437 aa) fasta scores: E(): 2.1e-54, 38.47% id in 434 aa; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.472
citW
Similar to Klebsiella pneumoniae citrate/acetate antiporter CitW SWALL:Q8VS41 (EMBL:AF411142) (454 aa) fasta scores: E(): 1.9e-136, 76.75% id in 456 aa.
      
 0.457
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
      
 0.456
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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