Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1510Putative iron permease; Similar to Yersinia pestis similarity to some hypothetical proteins in b. subtilis ypo1941 or y2370 SWALL:Q9ZC51 (EMBL:AL031866) (639 aa) fasta scores: E(): 5.2e-172, 74.02% id in 639 aa, and to Pasteurella multocida hypothetical protein Pm0453 pSWALL:Q9CNH8 (EMBL:AE006081) (634 aa) fasta scores: E(): 9.6e-146, 64.36% id in 623 aa. (634 aa)    
Predicted Functional Partners:
ECA1511
Putative exported protein; Similar to Yersinia pestis 102 kbases unstable region: from 1 to 119443 ypo1942 SWALL:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 2.4e-63, 86.78% id in 174 aa, and to Pasteurella multocida hypothetical protein Pm0452 SWALL:Q9CNH9 (EMBL:AE006081) (173 aa) fasta scores: E(): 1.1e-57, 79.06% id in 172 aa.
 
  
 0.957
ECA1512
Putative membrane protein; Similar to Yersinia pestis putative integral membrane protein y2367 SWALL:AAM85925 (EMBL:AE013839) (484 aa) fasta scores: E(): 1.4e-119, 63.36% id in 464 aa, and to Pasteurella multocida hypothetical protein Pm0451 SWALL:Q9CNI0 (EMBL:AE006080) (465 aa) fasta scores: E(): 2e-85, 49.67% id in 463 aa.
 
  
 0.908
ECA1513
Putative permease; Similar to Yersinia pestis similar to ABC transporter: eg ybjz_ecoli hypothetical ABC transporter ypo1944 or y2366 SWALL:AAM85924 (EMBL:AL031866) (430 aa) fasta scores: E(): 9.9e-137, 81.86% id in 430 aa, and to Pasteurella multocida hypothetical protein Pm0450 SWALL:Q9CNI1 (EMBL:AE006080) (440 aa) fasta scores: E(): 4.2e-79, 67.95% id in 440 aa.
 
     0.841
ECA1514
Putative permease; Similar to Yersinia pestis putative integral membrane protein y2365 SWALL:Q8D0D2 (EMBL:AE013839) (406 aa) fasta scores: E(): 5.3e-111, 83.06% id in 372 aa, and to Pasteurella multocida hypothetical protein Pm0449 SWALL:Q9CNI2 (EMBL:AE006080) (371 aa) fasta scores: E(): 1.3e-90, 67.92% id in 371 aa.
 
     0.840
ECA1515
ABC transporter ATP binding protein; Similar to Yersinia pestis similar to many ypo1946 or y2364 SWALL:AAM85922 (EMBL:AL031866) (237 aa) fasta scores: E(): 4.4e-66, 80.85% id in 235 aa, and to Pasteurella multocida hypothetical protein Pm0448 SWALL:Q9CNI3 (EMBL:AE006080) (227 aa) fasta scores: E(): 1.6e-59, 80% id in 220 aa.
 
     0.757
ECA1516
Similar to Yersinia pestis putative thioredoxin-family protein y2363 SWALL:AAM85921 (EMBL:AE013839) (176 aa) fasta scores: E(): 3.3e-34, 60.49% id in 162 aa, and to Pasteurella multocida ResA or pm0447 SWALL:Q9CNI4 (EMBL:AE006080) (175 aa) fasta scores: E(): 3e-18, 40% id in 165 aa.
 
   
 0.650
ECA0882
Similar to Yersinia pestis hypothetical protein ypo3025 SWALL:Q8ZCG6 (EMBL:AJ414155) (299 aa) fasta scores: E(): 1.3e-91, 75.25% id in 299 aa, and to Escherichia coli hypothetical protein YfeX SWALL:YFEX_ECOLI (SWALL:P76536) (299 aa) fasta scores: E(): 3.6e-79, 67.33% id in 300 aa.
  
  
 0.598
ECA1054
Similar to Escherichia coli putative prophage cp4-6 integrase IntF or b0281 SWALL:INTF_ECOLI (SWALL:P71298) (466 aa) fasta scores: E(): 0.0029, 24.6% id in 443 aa, and to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 1.2, 24.71% id in 445 aa.
  
     0.574
ECA4115
Similar to Ralstonia solanacearum probable ferric siderophore receptor protein rsp0414 or rs00871 SWALL:Q8XSQ3 (EMBL:AL646078) (746 aa) fasta scores: E(): 2.3e-136, 51.09% id in 734 aa, and to Vibrio anguillarum ferric anguibactin receptor precursor fatA SWALL:FATA_VIBAN (SWALL:P11461) (726 aa) fasta scores: E(): 3.5e-79, 35.45% id in 722 aa.
   
  
 0.551
ECA2438
Similar to Escherichia coli putative electron transport protein yccm or b0992 SWALL:YCCM_ECOLI (SWALL:P52636) (357 aa) fasta scores: E(): 1.4e-90, 68.2% id in 368 aa, and to Shewanella oneidensis iron-sulfur cluster-binding protein so4404 SWALL:AAN57371 (EMBL:AE015873) (375 aa) fasta scores: E(): 2.5e-35, 38.57% id in 337 aa.
 
    0.528
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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