STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1518Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa. (277 aa)    
Predicted Functional Partners:
rhaR
L-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose.
  
     0.614
ECA1517
Putative membrane protein; Similar to Escherichia coli hypothetical protein ytff or b4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.1e-83, 64.24% id in 316 aa, and to Salmonella typhimurium putative cationic amino acid transporter ytff or stm4400 SWALL:Q8ZK75 (EMBL:AE008906) (321 aa) fasta scores: E(): 6.8e-83, 64.59% id in 322 aa.
 
     0.608
ECA0352
Similar to Yersinia pestis AraC-family regulatory protein ypo0679 SWALL:AAM87046 (EMBL:AJ414144) (297 aa) fasta scores: E(): 3.2e-77, 66.21% id in 296 aa, and to Escherichia coli hypothetical transcriptional regulator YqhC SWALL:YQHC_ECOLI (SWALL:Q46855) (318 aa) fasta scores: E(): 1.2e-66, 57.77% id in 296 aa.
  
     0.535
ECA3783
Similar to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 7.3e-15, 27.68% id in 307 aa, and to Brucella suis transcriptional regulator, AraC family bra1192 SWALL:AAN34350 (EMBL:AE014611) (259 aa) fasta scores: E(): 6.2e-14, 26.33% id in 243 aa.
  
     0.514
ECA2247
Arac-family transcriptional regulator; Similar to Escherichia coli O157:H7 putative AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa putative transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa.
 
 
 0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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