STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1525ABC transporter ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa2308 SWALL:Q9I1G7 (EMBL:AE004657) (282 aa) fasta scores: E(): 2.2e-67, 75.61% id in 246 aa, and to Xanthomonas campestris ABC transporter ATP-binding component nrtcd or xcc0773 SWALL:Q8PCG1 (EMBL:AE012177) (279 aa) fasta scores: E(): 1.8e-64, 70.91% id in 251 aa. (288 aa)    
Predicted Functional Partners:
ECA1526
Similar to Pseudomonas putida ABC transporter, periplasmic binding protein pp0170 SWALL:AAN65803 (EMBL:AE016774) (339 aa) fasta scores: E(): 9.4e-68, 56.11% id in 335 aa, and to Xanthomonas axonopodis ABC transporter substrate binding protein xac0829 SWALL:Q8PP59 (EMBL:AE011714) (338 aa) fasta scores: E(): 1.1e-54, 47.72% id in 329 aa.
 
 
 0.993
ECA1524
Similar to Pseudomonas putida ABC transporter, permease protein pp0172 SWALL:AAN65805 (EMBL:AE016774) (287 aa) fasta scores: E(): 3.9e-82, 74.2% id in 283 aa, and to Xanthomonas axonopodis permease nrtb or xac0827 SWALL:Q8PP61 (EMBL:AE011714) (294 aa) fasta scores: E(): 2e-74, 67.95% id in 284 aa.
 
  
 0.968
tauC
Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-40, 41.6% id in 250 aa.
 
  
 0.873
nasE
Similar to Klebsiella oxytoca nitrate transporter component nasE SWALL:O32709 (EMBL:L27431) (294 aa) fasta scores: E(): 1.9e-78, 74.03% id in 285 aa.
  
 0.836
ECA3955
ABC transporter protein, membrane protein; Similar to Rhizobium meliloti putative transport system permease ABC transporter protein r02573 or smc02345 SWALL:Q92MP0 (EMBL:AL591791) (287 aa) fasta scores: E(): 1e-24, 33.46% id in 245 aa, and to Pseudomonas putida ABC-type transporter membrane permease component TauC SWALL:Q8KZR5 (EMBL:AB086390) (279 aa) fasta scores: E(): 2e-19, 29.41% id in 255 aa.
  
 0.830
atsB
Putative sulfate ester transporter, permease component; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 1.1e-103, 55.88% id in 510 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 1.6e-23, 36.14% id in 249 aa.
 
  
 0.829
astB
Sulfate ester ABC transporter permease protein; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 2e-89, 51.46% id in 513 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC ssuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 2.1e-26, 36.82% id in 239 aa.
 
  
 0.829
ssuC
Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC or b0934 SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 2.5e-77, 78.59% id in 257 aa.
 
  
 0.814
nasF
Nitrate-binding proteint; Similar to Klebsiella oxytoca nitrate transporter component nasF SWALL:Q48466 (EMBL:L27431) (418 aa) fasta scores: E(): 3.4e-118, 65.85% id in 410 aa.
  
 0.778
atsR-2
Similar to Pseudomonas aeruginosa putative sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa.
 
  
 0.776
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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