STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauASimilar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 2.3e-23, 29.21% id in 332 aa, and to Rhizobium loti taurine transport system periplasmic protein mlr4517 SWALL:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2e-27, 32.74% id in 342 aa. (337 aa)    
Predicted Functional Partners:
tauC
Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-40, 41.6% id in 250 aa.
 
 
 0.979
tauB
Similar to Escherichia coli taurine transport ATP-binding protein TauB or SsiB or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 1.3e-36, 45.18% id in 239 aa.
 
   
 0.957
ECA1524
Similar to Pseudomonas putida ABC transporter, permease protein pp0172 SWALL:AAN65805 (EMBL:AE016774) (287 aa) fasta scores: E(): 3.9e-82, 74.2% id in 283 aa, and to Xanthomonas axonopodis permease nrtb or xac0827 SWALL:Q8PP61 (EMBL:AE011714) (294 aa) fasta scores: E(): 2e-74, 67.95% id in 284 aa.
 
 
 0.922
astB
Sulfate ester ABC transporter permease protein; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 2e-89, 51.46% id in 513 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC ssuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 2.1e-26, 36.82% id in 239 aa.
 
 
 0.906
atsB
Putative sulfate ester transporter, permease component; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 1.1e-103, 55.88% id in 510 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 1.6e-23, 36.14% id in 249 aa.
 
 
 0.904
ssuC
Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC or b0934 SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 2.5e-77, 78.59% id in 257 aa.
 
 
 0.885
ECA3955
ABC transporter protein, membrane protein; Similar to Rhizobium meliloti putative transport system permease ABC transporter protein r02573 or smc02345 SWALL:Q92MP0 (EMBL:AL591791) (287 aa) fasta scores: E(): 1e-24, 33.46% id in 245 aa, and to Pseudomonas putida ABC-type transporter membrane permease component TauC SWALL:Q8KZR5 (EMBL:AB086390) (279 aa) fasta scores: E(): 2e-19, 29.41% id in 255 aa.
 
 
 0.880
ECA1913
ABC transporter, permease protein; Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-22, 35.07% id in 268 aa, and to Caulobacter crescentus ABC transporter, permease protein cc1832 SWALL:Q9A794 (EMBL:AE005857) (271 aa) fasta scores: E(): 1.8e-50, 53% id in 266 aa.
 
 
 0.878
nasE
Similar to Klebsiella oxytoca nitrate transporter component nasE SWALL:O32709 (EMBL:L27431) (294 aa) fasta scores: E(): 1.9e-78, 74.03% id in 285 aa.
 
 
 0.818
atsR-2
Similar to Pseudomonas aeruginosa putative sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa.
  
 
 0.813
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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