Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA1531Similar to Pseudomonas sp. 1-aminocyclopropane-1-carboxylate deaminase SWALL:1A1D_PSESP (SWALL:Q00740) (338 aa) fasta scores: E(): 2.4e-42, 40.47% id in 336 aa, and to Caulobacter crescentus 1-aminocyclopropane-1-carboxylate deaminase cc2032 SWALL:Q9A6Q2 (EMBL:AE005876) (333 aa) fasta scores: E(): 1.5e-68, 58.73% id in 332 aa. (337 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
  0.945
aatA
Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 5.9e-80, 50.62% id in 399 aa, and to Agrobacterium tumefaciens aspartate aminotransferase A AatA or atu4278 or agr_l_1171 SWALL:Q8U821 (EMBL:AE009356) (412 aa) fasta scores: E(): 7.9e-115, 72.04% id in 397 aa.
     
  0.944
ECA1532
Putative aspartate racemase; Similar to Streptococcus thermophilus aspartate racemase SWALL:RACD_STRTR (SWALL:P29079) (243 aa) fasta scores: E(): 9.6e-15, 30.43% id in 207 aa, and to Pyrococcus furiosus putative aspartate racemase pf0980 SWALL:Q8U269 (EMBL:AE010210) (228 aa) fasta scores: E(): 1.1e-27, 40.26% id in 231 aa.
 
  
  0.916
aspC
Similar to Escherichia coli aspartate aminotransferase AspC or b0928 SWALL:AAT_ECOLI (SWALL:P00509) (396 aa) fasta scores: E(): 1.2e-137, 84.59% id in 396 aa.
     
  0.878
tauA
Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 2.3e-23, 29.21% id in 332 aa, and to Rhizobium loti taurine transport system periplasmic protein mlr4517 SWALL:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2e-27, 32.74% id in 342 aa.
       0.733
tauB
Similar to Escherichia coli taurine transport ATP-binding protein TauB or SsiB or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 1.3e-36, 45.18% id in 239 aa.
       0.727
ECA1527
Putative malate/lactate dehydrogenase; Similar to Methanococcus jannaschii L-sulfolactate dehydrogenase ComC or Mdh or mj1425 SWALL:COMC_METJA (SWALL:Q58820) (344 aa) fasta scores: E(): 1.5e-25, 31.57% id in 323 aa, and to Escherichia coli O157:H7 hypothetical oxidoreductase ybic ybic or z1022 or ecs0879 SWALL:YBIC_ECO57 (SWALL:P58409) (361 aa) fasta scores: E(): 4e-52, 43.33% id in 330 aa.
 
  
  0.718
tauC
Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-40, 41.6% id in 250 aa.
       0.709
metC
Similar to Escherichia coli cystathionine beta-lyase MetC or b3008 SWALL:METC_ECOLI (SWALL:P06721) (395 aa) fasta scores: E(): 8.3e-124, 73.85% id in 394 aa.
     
 0.668
metB
Similar to Escherichia coli cystathionine gamma-synthase MetB or b3939 SWALL:METB_ECOLI (SWALL:P00935) (386 aa) fasta scores: E(): 3.8e-129, 87.01% id in 385 aa.
     
 0.619
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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