STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuBAnaerobic C4-dicarboxylate transporter; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. (446 aa)    
Predicted Functional Partners:
dcuC
Anaerobic C4-dicarboxylate transporter; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri anaerobic c4-dicarboxylate transporter DcuC or b0621 or z0766 or ecs0660 or sf0659 SWALL:DCUC_ECOLI (SWALL:Q47134) (461 aa) fasta scores: E(): 3.1e-137, 81.25% id in 448 aa.
  
   
 0.704
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.581
manX
PTS system, mannose-specific IIab component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific iiab component ManX or PtsL or GptB or b1817 or c2223 or z2860 or ecs2527 or sf1411 SWALL:PTNA_ECOLI (SWALL:P08186) (322 aa) fasta scores: E(): 5.5e-80, 74.84% id in 322 aa.
   
  
 0.545
aspA1
Aspartate ammonia-lyase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri aspartate ammonia-lyase AspA or b4139 or c5222 or sf4293 SWALL:ASPA_ECOLI (SWALL:P04422) (478 aa) fasta scores: E(): 7.8e-167, 88.05% id in 477 aa. Also similar to ECA0621 (91.195% id. in 477 aa overlap).
 
  
 0.544
arbF
Similar to Erwinia chrysanthemi pts system, beta-glucoside-specific IIABC component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 4.9e-165, 70.14% id in 633 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIABC component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 2e-130, 57.07% id in 629 aa.
      
 0.521
maeN
Similar to Bacillus subtilis Na(+)-malate symporter MaeN SWALL:MAEN_BACSU (SWALL:O05256) (448 aa) fasta scores: E(): 2.5e-95, 58.93% id in 414 aa.
      
 0.512
nrdD
Similar to Escherichia coli anaerobic ribonucleoside-triphosphate reductase NrdD or b4238 SWALL:NRDD_ECOLI (SWALL:P28903) (712 aa) fasta scores: E(): 0, 85.97% id in 713 aa.
     
 0.501
hybO
Hydrogenase-2 small subunit; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hydrogenase-2 small chain precursor hybO or b2997 or c3734 or z4351 or ecs3882 SWALL:MBHT_ECOLI (SWALL:Q46847) (372 aa) fasta scores: E(): 2.9e-121, 80.75% id in 369 aa.
   
  
 0.494
focA
Probable formate transporter; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 probable formate transporter 1 FocA or FocA_2 or b0904 or c1042 or z1250 or ecs0987 SWALL:FOCA_ECOLI (SWALL:P21501) (285 aa) fasta scores: E(): 8.3e-94, 80.7% id in 285 aa.
      
 0.491
adhE
Aldehyde-alcohol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
  
 0.485
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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