STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1548Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa. (592 aa)    
Predicted Functional Partners:
ECA1549
Putative ABC transporter substrate-binding protein; Similar to Streptomyces coelicolor putative solute-binding lipoprotein sco6644 or sc4g2.18 SWALL:O86690 (EMBL:AL939128) (503 aa) fasta scores: E(): 1.4e-76, 46.09% id in 486 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1202 or agr_c_2215 SWALL:Q8UG40 (EMBL:AE009083) (509 aa) fasta scores: E(): 4.9e-23, 33.63% id in 440 aa.
 
 
 0.970
ECA1552
Similar to Bifidobacterium longum probable ATP-binding protein of ABC transporter system for peptides OppD or bl1158 SWALL:AAN24963 (EMBL:AE014740) (263 aa) fasta scores: E(): 4.5e-27, 43.08% id in 253 aa, and to Corynebacterium efficiens putative ABC transporter ATP-binding protein ce2227 SWALL:BAC19037 (EMBL:AP005221) (491 aa) fasta scores: E(): 1.1e-25, 41.12% id in 248 aa.
 
 
 0.917
ECA2960
Similar to Rhizobium loti probable peptide ABC transporter ATP-binding abc transporter protein msi192 SWALL:Q8KJF3 (EMBL:AL672113) (335 aa) fasta scores: E(): 1.6e-55, 52.81% id in 320 aa, and to Bacillus halodurans oligopeptide ABC transporter appd or bh0350 SWALL:Q9KFX0 (EMBL:AP001508) (329 aa) fasta scores: E(): 6.5e-57, 53.53% id in 325 aa.
 
 
 0.865
ECA1551
ABC transporter ATP binding protein; Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3437 or agr_l_2779 SWALL:Q8UAD7 (EMBL:AE009274) (311 aa) fasta scores: E(): 1.9e-27, 43.86% id in 228 aa, and to Brucella suis peptide ABC transporter, ATP-binding protein bra0404 SWALL:AAN33601 (EMBL:AE014539) (317 aa) fasta scores: E(): 7.6e-26, 35.52% id in 259 aa.
 
  
 0.855
ECA4073
ABC transporter ATP binding protein; Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3457 or agr_l_2743 SWALL:Q8UAB7 (EMBL:AE009276) (278 aa) fasta scores: E(): 6.5e-62, 65.07% id in 272 aa, and to Rhizobium meliloti putative dipeptide transport ATP-binding ABC transporter protein dppd2 or r02410 or smc01528 SWALL:Q92N29 (EMBL:AL591790) (277 aa) fasta scores: E(): 3e-58, 61.99% id in 271 aa.
 
 
 0.851
oppD
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or stm1743 SWALL:OPPD_SALTY (SWALL:P04285) (335 aa) fasta scores: E(): 3.4e-102, 86.29% id in 321 aa; Belongs to the ABC transporter superfamily.
 
 
 0.847
dppD
Dipeptide transport ATP-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri dipeptide transport ATP-binding protein DppD or b3541 or z4958 or ecs4421 or sf3576 SWALL:DPPD_ECOLI (SWALL:P37314) (327 aa) fasta scores: E(): 1.9e-103, 88.07% id in 327 aa; Belongs to the ABC transporter superfamily.
 
 
 0.832
oppF
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF or stm1742 SWALL:OPPF_SALTY (SWALL:P08007) (334 aa) fasta scores: E(): 1.9e-108, 85.88% id in 333 aa; Belongs to the ABC transporter superfamily.
 
 
 0.821
ECA0448
Similar to Xanthomonas axonopodis ABC transporter oligopeptide binding protein oppa or xac0856 SWALL:Q8PP32 (EMBL:AE011717) (538 aa) fasta scores: E(): 9.5e-59, 33.84% id in 526 aa, and to Escherichia coli O157:H7 periplasmic binding protein for nickel nika or z4868 or ecs4343 SWALL:Q8X5U3 (EMBL:AE005572) (524 aa) fasta scores: E(): 9.3e-27, 26.4% id in 534 aa.
 
 
 0.792
ECA4426
Putative extracellular solute-binding protein; Similar to Ralstonia solanacearum probable substrate-binding periplasmic rsc0044 or rs01867 SWALL:Q8Y3D6 (EMBL:AL646057) (530 aa) fasta scores: E(): 8.5e-82, 45.54% id in 516 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu5253 or agr_pat_361 SWALL:Q8UK70 (EMBL:AE008948) (545 aa) fasta scores: E(): 2.8e-65, 39.53% id in 516 aa.
 
 
 0.779
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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