STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1550Similar to Streptomyces coelicolor putative transport system permease protein sco6646 or sc4g2.20 SWALL:O86692 (EMBL:AL939128) (436 aa) fasta scores: E(): 5e-56, 43.9% id in 394 aa, and to Mycobacterium tuberculosis putative membrane transport protein rv0849 or mtv043.42 SWALL:O53861 (EMBL:AL022004) (419 aa) fasta scores: E(): 9.5e-37, 35.88% id in 379 aa. (415 aa)    
Predicted Functional Partners:
ECA1549
Putative ABC transporter substrate-binding protein; Similar to Streptomyces coelicolor putative solute-binding lipoprotein sco6644 or sc4g2.18 SWALL:O86690 (EMBL:AL939128) (503 aa) fasta scores: E(): 1.4e-76, 46.09% id in 486 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1202 or agr_c_2215 SWALL:Q8UG40 (EMBL:AE009083) (509 aa) fasta scores: E(): 4.9e-23, 33.63% id in 440 aa.
 
     0.807
ECA1548
Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa.
 
     0.709
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
  
 0.561
ECA1551
ABC transporter ATP binding protein; Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3437 or agr_l_2779 SWALL:Q8UAD7 (EMBL:AE009274) (311 aa) fasta scores: E(): 1.9e-27, 43.86% id in 228 aa, and to Brucella suis peptide ABC transporter, ATP-binding protein bra0404 SWALL:AAN33601 (EMBL:AE014539) (317 aa) fasta scores: E(): 7.6e-26, 35.52% id in 259 aa.
       0.545
ECA1552
Similar to Bifidobacterium longum probable ATP-binding protein of ABC transporter system for peptides OppD or bl1158 SWALL:AAN24963 (EMBL:AE014740) (263 aa) fasta scores: E(): 4.5e-27, 43.08% id in 253 aa, and to Corynebacterium efficiens putative ABC transporter ATP-binding protein ce2227 SWALL:BAC19037 (EMBL:AP005221) (491 aa) fasta scores: E(): 1.1e-25, 41.12% id in 248 aa.
       0.545
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
   
 0.526
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
 
   
 0.463
ECA3160
Similar to Salmonella typhimurium putative transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 3.8e-14, 38.68% id in 137 aa, and to Salmonella typhi putative DNA-binding protein sty2429 SWALL:Q8Z5A0 (EMBL:AL627273) (129 aa) fasta scores: E(): 4.4e-14, 38.68% id in 137 aa.
  
     0.430
amn
AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
       0.421
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.