STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1563Putative lipoprotein; Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa. (207 aa)    
Predicted Functional Partners:
ECA1566
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0603 or rs04842 SWALL:Q8Y1T6 (EMBL:AL646060) (292 aa) fasta scores: E(): 4.1e-18, 32.27% id in 189 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a pqia or pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-07, 23.4% id in 188 aa.
 
  
 0.952
ECA1564
Similar to Burkholderia pseudomallei paraquat-inducible protein lpw206-207 SWALL:Q93M60 (EMBL:AY027530) (553 aa) fasta scores: E(): 1.3e-86, 45.97% id in 522 aa, and to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 8.2e-45, 29.69% id in 532 aa.
 
   
 0.950
ECA1565
Similar to Pseudomonas aeruginosa paraquat-inducible protein a SWALL:Q9APY1 (EMBL:AF241171) (237 aa) fasta scores: E(): 2.7e-27, 41.88% id in 191 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-26, 42.71% id in 199 aa.
 
  
 0.944
ECA1567
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein rsc2561 or rs00746 SWALL:Q8XWB3 (EMBL:AL646070) (220 aa) fasta scores: E(): 2.1e-43, 56.22% id in 217 aa, and to Bradyrhizobium japonicum Blr1214 protein blr1214 SWALL:BAC46479 (EMBL:AP005939) (220 aa) fasta scores: E(): 9.6e-41, 54.58% id in 207 aa.
 
     0.900
pqiB
Similar to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 3.8e-141, 66.72% id in 544 aa.
 
   
 0.626
ECA2462
Similar to Yersinia pestis putative membrane protein ypo1702 or y1864 SWALL:AAM85431 (EMBL:AJ414150) (450 aa) fasta scores: E(): 7.4e-114, 68.47% id in 406 aa, and to Salmonella typhimurium putative inner membrane protein yebs or stm1848 SWALL:Q8ZNZ4 (EMBL:AE008782) (427 aa) fasta scores: E(): 1.7e-111, 65.69% id in 411 aa.
 
  
 0.623
pqiA
Paraquat-inducible protein A; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein A PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.7e-111, 66.42% id in 411 aa.
 
  
 0.606
ECA0815
Similar to Pseudomonas putida membrane protein, putative pp4850 SWALL:AAN70419 (EMBL:AE016792) (355 aa) fasta scores: E(): 6.8e-61, 51.66% id in 331 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0411 SWALL:Q8XSQ6 (EMBL:AL646078) (341 aa) fasta scores: E(): 3.4e-43, 42.07% id in 328 aa.
  
     0.452
nosA
TonB dependent receptor; Similar to Pseudomonas stutzeri NosA protein precursor NosA SWALL:Q00620 (EMBL:M60717) (683 aa) fasta scores: E(): 9.3e-150, 57.39% id in 669 aa, and to Yersinia pestis putative membrane receptor protein ypo0164 or y3948 SWALL:Q8ZJE5 (EMBL:AJ414141) (686 aa) fasta scores: E(): 4.6e-177, 64.46% id in 667 aa.
  
     0.432
ECA3842
Putative isoflavone oxidoreductase; Similar to Cicer arietinum isoflavone reductase Ifr SWALL:IFR_CICAR (SWALL:Q00016) (318 aa) fasta scores: E(): 8.4e-10, 26.11% id in 291 aa, and to Salmonella typhi putative oxidoreductase sty1385 SWALL:Q8Z7A4 (EMBL:AL627270) (309 aa) fasta scores: E(): 3.6e-57, 54.88% id in 297 aa.
  
     0.412
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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