STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1565Similar to Pseudomonas aeruginosa paraquat-inducible protein a SWALL:Q9APY1 (EMBL:AF241171) (237 aa) fasta scores: E(): 2.7e-27, 41.88% id in 191 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-26, 42.71% id in 199 aa. (207 aa)    
Predicted Functional Partners:
ECA1564
Similar to Burkholderia pseudomallei paraquat-inducible protein lpw206-207 SWALL:Q93M60 (EMBL:AY027530) (553 aa) fasta scores: E(): 1.3e-86, 45.97% id in 522 aa, and to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 8.2e-45, 29.69% id in 532 aa.
  
 0.952
ECA1563
Putative lipoprotein; Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa.
 
  
 0.944
ECA1566
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0603 or rs04842 SWALL:Q8Y1T6 (EMBL:AL646060) (292 aa) fasta scores: E(): 4.1e-18, 32.27% id in 189 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a pqia or pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-07, 23.4% id in 188 aa.
    
0.892
pqiB
Similar to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 3.8e-141, 66.72% id in 544 aa.
  
 0.812
ECA2463
Similar to Yersinia pestis hypothetical protein y1863 SWALL:AAM85430 (EMBL:AE013789) (885 aa) fasta scores: E(): 0, 70.97% id in 882 aa, and to Escherichia coli hypothetical protein yebt or b1834 SWALL:YEBT_ECOLI (SWALL:P76272) (877 aa) fasta scores: E(): 0, 68.98% id in 877 aa.
     0.756
ECA1567
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein rsc2561 or rs00746 SWALL:Q8XWB3 (EMBL:AL646070) (220 aa) fasta scores: E(): 2.1e-43, 56.22% id in 217 aa, and to Bradyrhizobium japonicum Blr1214 protein blr1214 SWALL:BAC46479 (EMBL:AP005939) (220 aa) fasta scores: E(): 9.6e-41, 54.58% id in 207 aa.
 
     0.741
ECA2531
Similar to Yersinia pestis putative lipoprotein protein ypo1422 or y2746 SWALL:Q8ZG84 (EMBL:AJ414148) (192 aa) fasta scores: E(): 4.8e-43, 62.43% id in 189 aa, and to Salmonella typhimurium, and Salmonella typhi putative outer membrane protein ymba or stm1065 or sty1086 SWALL:Q8XG15 (EMBL:AE008746) (187 aa) fasta scores: E(): 2.6e-38, 54.54% id in 187 aa.
 
  
 0.492
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.431
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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