STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1566Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0603 or rs04842 SWALL:Q8Y1T6 (EMBL:AL646060) (292 aa) fasta scores: E(): 4.1e-18, 32.27% id in 189 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a pqia or pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-07, 23.4% id in 188 aa. (216 aa)    
Predicted Functional Partners:
ECA1564
Similar to Burkholderia pseudomallei paraquat-inducible protein lpw206-207 SWALL:Q93M60 (EMBL:AY027530) (553 aa) fasta scores: E(): 1.3e-86, 45.97% id in 522 aa, and to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 8.2e-45, 29.69% id in 532 aa.
 
 
 0.962
ECA1563
Putative lipoprotein; Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa.
 
  
 0.953
ECA1565
Similar to Pseudomonas aeruginosa paraquat-inducible protein a SWALL:Q9APY1 (EMBL:AF241171) (237 aa) fasta scores: E(): 2.7e-27, 41.88% id in 191 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-26, 42.71% id in 199 aa.
    
0.893
pqiB
Similar to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 3.8e-141, 66.72% id in 544 aa.
 
 
 0.840
pqiA
Paraquat-inducible protein A; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein A PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.7e-111, 66.42% id in 411 aa.
 
     0.788
ECA1567
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein rsc2561 or rs00746 SWALL:Q8XWB3 (EMBL:AL646070) (220 aa) fasta scores: E(): 2.1e-43, 56.22% id in 217 aa, and to Bradyrhizobium japonicum Blr1214 protein blr1214 SWALL:BAC46479 (EMBL:AP005939) (220 aa) fasta scores: E(): 9.6e-41, 54.58% id in 207 aa.
 
     0.764
ECA2463
Similar to Yersinia pestis hypothetical protein y1863 SWALL:AAM85430 (EMBL:AE013789) (885 aa) fasta scores: E(): 0, 70.97% id in 882 aa, and to Escherichia coli hypothetical protein yebt or b1834 SWALL:YEBT_ECOLI (SWALL:P76272) (877 aa) fasta scores: E(): 0, 68.98% id in 877 aa.
 
     0.731
mug
G/U mismatch-specific DNA glycosylase; Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. The complementary strand guanine functions in substrate recognition. Required for DNA damage lesion repair in stationary-phase cells; Belongs to the uracil-DNA glycosylase (UDG) superfamily. TDG/mug family.
      
 0.500
cspD
Cold shock-like protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cold shock-like protein CspD or CspH or b0880 or c1017 or z1117 or ecs0966 or sf0840 SWALL:CSPD_ECOLI (SWALL:P24245) (74 aa) fasta scores: E(): 9.7e-25, 87.32% id in 71 aa.
      
 0.499
ibpA
Heat shock protein A; Associates with aggregated proteins, together with IbpB, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress. Aggregated proteins bound to the IbpAB complex are more efficiently refolded and reactivated by the ATP-dependent chaperone systems ClpB and DnaK/DnaJ/GrpE. Its activity is ATP-independent.
  
   
 0.494
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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