STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1574Probable transporter; Similar to Rhizobium meliloti putative transport protein r00217 or smc02892 SWALL:Q92SY1 (EMBL:AL591782) (492 aa) fasta scores: E(): 9.3e-32, 44.06% id in 438 aa, and to Rhizobium loti probable transmembrane efflux protein mlr1142 SWALL:Q98L80 (EMBL:AP002996) (490 aa) fasta scores: E(): 4.9e-27, 37.55% id in 466 aa. (411 aa)    
Predicted Functional Partners:
emrA
Similar to Erwinia chrysanthemi EmrA protein EmrA SWALL:Q93KB1 (EMBL:AJ410307) (391 aa) fasta scores: E(): 7.9e-104, 72.63% id in 391 aa, and to Escherichia coli multidrug resistance protein A EmrA or b2685 SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 5.7e-94, 68.28% id in 391 aa.
 
 
 0.680
ECA1575
Similar to Rhizobium leguminosarum transcriptional regulator HmrR SWALL:HMMR_RHILV (SWALL:Q9X5V4) (129 aa) fasta scores: E(): 3.2e-07, 33.6% id in 125 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5116 SWALL:Q9HU68 (EMBL:AE004924) (141 aa) fasta scores: E(): 1.4e-21, 54.03% id in 124 aa.
 
     0.610
ECA1573
Probable transporter; Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 5e-40, 31.1% id in 389 aa, and to Ralstonia solanacearum probable transport transmembrane protein rsc0216 or rs00648 SWALL:Q8Y2W6 (EMBL:AL646058) (409 aa) fasta scores: E(): 7.1e-61, 45.26% id in 380 aa.
 
  
0.604
ECA1576
Hypothetical protein; No significant database matches.
       0.466
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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