Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhrSimilar to Escherichia coli probable ATP-dependent helicase Lhr or RhlF or b1653 SWALL:LHR_ECOLI (SWALL:P30015) (1538 aa) fasta scores: E(): 9.6e-156, 57.39% id in 1603 aa, and to Streptomyces coelicolor ATP dependent DNA helicase sco5761 or sc7c7.16C SWALL:O86821 (EMBL:AL939125) (1690 aa) fasta scores: E(): 3.8e-129, 51.11% id in 1479 aa. (1598 aa)    
Predicted Functional Partners:
ECA1590
Similar to Rhizobium loti hypothetical protein Mlr0026 SWALL:Q98NQ9 (EMBL:AP002994) (107 aa) fasta scores: E(): 2.7e-08, 34.61% id in 104 aa, and to Caulobacter crescentus hypothetical protein Cc0401 SWALL:Q9AB33 (EMBL:AE005713) (127 aa) fasta scores: E(): 1e-06, 29.78% id in 94 aa.
       0.773
ECA1465
Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium putative inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa.
   
    0.649
ECA1591
Conserved hypothetical protein; Similar over its C-terminal region to many including Salmonella typhimurium putative cytoplasmic protein ybdf or stm0579 SWALL:Q8ZR44 (EMBL:AE008722) (122 aa) fasta scores: E(): 1.8e-09, 33.89% id in 118 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybdf or b0579 or z0718 or ecs0617 SWALL:YBDF_ECOLI (SWALL:P39454) (122 aa) fasta scores: E(): 2.2e-07, 33.04% id in 115 aa.
       0.565
ECA1592
Putative acetyl-hydrolase; Similar to Streptomyces hygroscopicus acetyl-hydrolase Bah SWALL:BAH_STRHY (SWALL:Q01109) (299 aa) fasta scores: E(): 8.6e-34, 43.01% id in 265 aa, and to Streptomyces viridochromogenes N-acetylphosphinothricin-tripetide- deacetylase Dea SWALL:Q56171 (EMBL:X65195) (299 aa) fasta scores: E(): 1.7e-33, 43.34% id in 263 aa.
       0.508
nnrE
Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...]
  
    0.502
ECA0584
Similar to Bacillus coagulans restriction enzyme bgci alpha subunit bcgiA SWALL:T4BA_BACCO (SWALL:Q07605) (637 aa) fasta scores: E(): 1.3e-46, 31.12% id in 633 aa, and to Staphylococcus aureus bacteriophage phi-42 hypothetical 72.6 kDa protein SWALL:P95687 (EMBL:X94423) (639 aa) fasta scores: E(): 1.9e-42, 30.78% id in 653 aa.
  
  
 0.469
ECA0585
Similar to Bacillus coagulans restriction enzyme bgci beta subunit BcgiB SWALL:T4BB_BACCO (SWALL:Q07606) (341 aa) fasta scores: E(): 3.2e-05, 24.05% id in 345 aa, and to Pseudomonas syringae conserved domain protein pspto0285 SWALL:Q88AU8 (EMBL:AE016856) (360 aa) fasta scores: E(): 0.035, 23.75% id in 320 aa.
  
  
 0.469
ECA0597
Similar to Salmonella typhi hypothetical protein sty4592 SWALL:Q8Z1H4 (EMBL:AL627282) (649 aa) fasta scores: E(): 1.3e-115, 48.69% id in 651 aa.
  
  
 0.469
hsdM
Subunit M of type I restriction-modification system; Similar to Escherichia coli type I restriction enzyme EcoEI M protein HsdM SWALL:T1ME_ECOLI (SWALL:Q47282) (490 aa) fasta scores: E(): 6.2e-193, 97.55% id in 490 aa, and to Salmonella enterica styski methylase HsdM SWALL:P95732 (EMBL:Y11005) (493 aa) fasta scores: E(): 2e-178, 89.38% id in 490 aa.
  
  
 0.469
ECA2027
Putative acyltransferase; Similar to Pseudomonas aeruginosa hypothetical protein Pa4338 SWALL:Q9HW63 (EMBL:AE004850) (426 aa) fasta scores: E(): 4.1e-97, 57.42% id in 411 aa, and to Bacteroides thetaiotaomicron acyltransferase bt1546 SWALL:AAO76653 (EMBL:AE016932) (335 aa) fasta scores: E(): 2.4e-05, 28.27% id in 237 aa.
   
    0.414
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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