Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ECA1591Conserved hypothetical protein; Similar over its C-terminal region to many including Salmonella typhimurium putative cytoplasmic protein ybdf or stm0579 SWALL:Q8ZR44 (EMBL:AE008722) (122 aa) fasta scores: E(): 1.8e-09, 33.89% id in 118 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybdf or b0579 or z0718 or ecs0617 SWALL:YBDF_ECOLI (SWALL:P39454) (122 aa) fasta scores: E(): 2.2e-07, 33.04% id in 115 aa. (249 aa)    
Predicted Functional Partners:
ECA1592
Putative acetyl-hydrolase; Similar to Streptomyces hygroscopicus acetyl-hydrolase Bah SWALL:BAH_STRHY (SWALL:Q01109) (299 aa) fasta scores: E(): 8.6e-34, 43.01% id in 265 aa, and to Streptomyces viridochromogenes N-acetylphosphinothricin-tripetide- deacetylase Dea SWALL:Q56171 (EMBL:X65195) (299 aa) fasta scores: E(): 1.7e-33, 43.34% id in 263 aa.
       0.689
ECA3688
Similar to Vibrio cholerae hypothetical protein Vc0373 SWALL:Q9KUY5 (EMBL:AE004125) (139 aa) fasta scores: E(): 4e-37, 64.02% id in 139 aa, and to Pseudomonas stutzeri pa5286-like protein SWALL:Q8RPA9 (EMBL:AF414717) (141 aa) fasta scores: E(): 2.1e-34, 60.87% id in 138 aa.
  
  
 0.683
ECA1590
Similar to Rhizobium loti hypothetical protein Mlr0026 SWALL:Q98NQ9 (EMBL:AP002994) (107 aa) fasta scores: E(): 2.7e-08, 34.61% id in 104 aa, and to Caulobacter crescentus hypothetical protein Cc0401 SWALL:Q9AB33 (EMBL:AE005713) (127 aa) fasta scores: E(): 1e-06, 29.78% id in 94 aa.
       0.569
lhr
Similar to Escherichia coli probable ATP-dependent helicase Lhr or RhlF or b1653 SWALL:LHR_ECOLI (SWALL:P30015) (1538 aa) fasta scores: E(): 9.6e-156, 57.39% id in 1603 aa, and to Streptomyces coelicolor ATP dependent DNA helicase sco5761 or sc7c7.16C SWALL:O86821 (EMBL:AL939125) (1690 aa) fasta scores: E(): 3.8e-129, 51.11% id in 1479 aa.
       0.565
ECA1593
Similar to Xanthomonas campestris transcriptional regulator xcc3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 2.6e-22, 42.58% id in 310 aa.
 
     0.506
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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