STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1595Similar to Ralstonia solanacearum hypothetical protein rsc2592 or rs00840 SWALL:Q8XW83 (EMBL:AL646070) (118 aa) fasta scores: E(): 2.1e-19, 43.96% id in 116 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1254 SWALL:BAC13210 (EMBL:AP004597) (118 aa) fasta scores: E(): 2.9e-19, 41.02% id in 117 aa. (118 aa)    
Predicted Functional Partners:
ECA1594
Hypothetical protein; No significant database matches.
 
     0.555
ECA3688
Similar to Vibrio cholerae hypothetical protein Vc0373 SWALL:Q9KUY5 (EMBL:AE004125) (139 aa) fasta scores: E(): 4e-37, 64.02% id in 139 aa, and to Pseudomonas stutzeri pa5286-like protein SWALL:Q8RPA9 (EMBL:AF414717) (141 aa) fasta scores: E(): 2.1e-34, 60.87% id in 138 aa.
  
  
 0.505
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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