STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsCArsenate reductase; Similar to Escherichia coli, and Shigella flexneri arsenate reductase ArsC or ArsG or b3503 or sf3536 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.1e-44, 81.56% id in 141 aa. (141 aa)    
Predicted Functional Partners:
arsB
Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
     
 0.899
arsH
Arsenical resistance protein; Similar to Yersinia enterocolitica ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 2.8e-86, 91.81% id in 232 aa, and to Salmonella typhimurium ArsH protein SWALL:Q8L245 (EMBL:AP005147) (216 aa) fasta scores: E(): 6.4e-69, 80.09% id in 211 aa.
 
  
 0.855
arsR
Similar to Escherichia coli arsenical resistance operon repressor ArsR or ArsE or b3501 SWALL:ARSR_ECOLI (SWALL:P37309) (117 aa) fasta scores: E(): 7.2e-25, 58.09% id in 105 aa.
     
 0.831
ECA2265
Putative membrane protein; Similar to Pseudomonas resinovorans efflux pump SWALL:BAC41699 (EMBL:AB088420) (319 aa) fasta scores: E(): 4.4e-44, 44.08% id in 313 aa, and to Pseudomonas putida transporter, bile acid/na+ symporter family pp0670 SWALL:AAN66295 (EMBL:AE016776) (317 aa) fasta scores: E(): 6.3e-48, 46.45% id in 310 aa.
     
 0.616
gcvP
Putative glycine cleavage system P protein (glycine dehydrogenase [decarboxylating]); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.558
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.423
amn
AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
 
  
 0.420
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.