STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsBArsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family. (429 aa)    
Predicted Functional Partners:
arsR
Similar to Escherichia coli arsenical resistance operon repressor ArsR or ArsE or b3501 SWALL:ARSR_ECOLI (SWALL:P37309) (117 aa) fasta scores: E(): 7.2e-25, 58.09% id in 105 aa.
 
  
 0.901
arsC
Arsenate reductase; Similar to Escherichia coli, and Shigella flexneri arsenate reductase ArsC or ArsG or b3503 or sf3536 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.1e-44, 81.56% id in 141 aa.
     
 0.895
arsH
Arsenical resistance protein; Similar to Yersinia enterocolitica ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 2.8e-86, 91.81% id in 232 aa, and to Salmonella typhimurium ArsH protein SWALL:Q8L245 (EMBL:AP005147) (216 aa) fasta scores: E(): 6.4e-69, 80.09% id in 211 aa.
 
  
 0.860
ECA2265
Putative membrane protein; Similar to Pseudomonas resinovorans efflux pump SWALL:BAC41699 (EMBL:AB088420) (319 aa) fasta scores: E(): 4.4e-44, 44.08% id in 313 aa, and to Pseudomonas putida transporter, bile acid/na+ symporter family pp0670 SWALL:AAN66295 (EMBL:AE016776) (317 aa) fasta scores: E(): 6.3e-48, 46.45% id in 310 aa.
     
 0.592
kefB
Glutathione-regulated potassium-efflux system protein; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
     
 0.471
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.425
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.416
copA
Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa.
     
 0.414
wzb
Probable protein-tyrosine-phosphatase; Similar to Salmonella typhimurium low molecular weight protein-tyrosine-phosphatase Wzb or stm2117 SWALL:WZB_SALTY (SWALL:Q9F7B2) (149 aa) fasta scores: E(): 1.5e-34, 65.73% id in 143 aa, and to Erwinia amylovora probable low molecular weight protein-tyrosine-phosphatase AmsI SWALL:AMSI_ERWAM (SWALL:Q46630) (144 aa) fasta scores: E(): 5.8e-37, 69.44% id in 144 aa.
     
 0.414
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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