Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mobCMobilization protein; Similar to Enterobacter cloacae MobC protein SWALL:Q9REB5 (EMBL:AJ224861) (243 aa) fasta scores: E(): 7.6e-14, 31.05% id in 219 aa. (248 aa)    
Predicted Functional Partners:
ECA1609
Mobilization protein; Similar to Enterobacter cloacae MobB protein SWALL:Q9REB6 (EMBL:AJ224861) (653 aa) fasta scores: E(): 1.1e-40, 29.89% id in 582 aa, and to Escherichia coli mobilization protein A MobA or B SWALL:MBA1_ECOLI (SWALL:P08098) (529 aa) fasta scores: E(): 1.8e-18, 28.96% id in 366 aa.
       0.782
mobB
Similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B MobB SWALL:MOBB_ECOLI (SWALL:P32125) (174 aa) fasta scores: E(): 1.2e-34, 64.84% id in 165 aa.
      
 0.530
ECA1607
Hypothetical protein; No significant database matches.
       0.518
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges the t [...]
  
  
 0.516
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
      
 0.498
tauB
Similar to Escherichia coli taurine transport ATP-binding protein TauB or SsiB or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 1.3e-36, 45.18% id in 239 aa.
      
 0.464
virB2
Putative conjugal transfer protein; Similar to Escherichia coli VirB2 protein VirB2 SWALL:Q91UX6 (EMBL:AJ297913) (102 aa) fasta scores: E(): 0.0022, 30.66% id in 75 aa.
      
 0.462
xerD
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges the b [...]
      
 0.436
argR
Arginine repressor; Regulates arginine biosynthesis genes.
      
 0.415
tauA
Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 2.3e-23, 29.21% id in 332 aa, and to Rhizobium loti taurine transport system periplasmic protein mlr4517 SWALL:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2e-27, 32.74% id in 342 aa.
      
 0.415
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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