STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1611Hypothetical plasmid protein; No significant database matches. (101 aa)    
Predicted Functional Partners:
kikA
Putative plasmid conjugation protein; Similar to Escherichia coli, and Salmonella typhimurium pkm101 conjugation proteins KikA SWALL:Q46691 (EMBL:U09868) (104 aa) fasta scores: E(): 5.5e-16, 49.47% id in 95 aa.
       0.741
virB11
Putative conjugal transfer protein; Part of the Type IV secretion system. Belongs to the GSP E family.
       0.523
virB10
Putative conjugal transfer protein; Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa.
       0.523
virB9
Putative conjugal transfer protein; Similar to Escherichia coli VirB9 protein VirB9 SWALL:Q91UW8 (EMBL:AJ297913) (290 aa) fasta scores: E(): 2.5e-15, 32.52% id in 289 aa.
       0.523
virB8
Putative conjugal transfer protein; Similar to Escherichia coli VirB8 protein VirB8 SWALL:Q91UW9 (EMBL:AJ297913) (236 aa) fasta scores: E(): 2.8e-14, 29.46% id in 224 aa.
       0.523
virB7
Putative conjugal transfer protein; Similar to Escherichia coli VirB7 protein VirB7 SWALL:Q91UX0 (EMBL:AJ297913) (54 aa) fasta scores: E(): 0.7, 40% id in 40 aa.
       0.523
ECA1610
Hypothetical plasmid protein; No significant database matches.
       0.500
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.