STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1623Hypothetical protein; No significant database matches. (92 aa)    
Predicted Functional Partners:
virB1
Putative conjugal transfer protein; Similar to Escherichia coli VirB1 protein VirB1 SWALL:Q91UX8 (EMBL:AJ297913) (253 aa) fasta scores: E(): 1.1e-12, 32.27% id in 220 aa.
       0.588
virB2
Putative conjugal transfer protein; Similar to Escherichia coli VirB2 protein VirB2 SWALL:Q91UX6 (EMBL:AJ297913) (102 aa) fasta scores: E(): 0.0022, 30.66% id in 75 aa.
       0.587
virB4
Putative conjugal transfer protein; Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa.
       0.554
virB5
Putative conjugal transfer protein; Similar to Escherichia coli VirB5 protein VirB5 SWALL:Q91UX3 (EMBL:AJ297913) (239 aa) fasta scores: E(): 0.00064, 22.88% id in 236 aa.
       0.531
ECA1618
Putative plasmid protein; Similar to Yersinia pestis Orf4 SWALL:Q9RPN3 (EMBL:AF152923) (90 aa) fasta scores: E(): 4.9e-05, 40.29% id in 67 aa, and to Escherichia coli Eex protein SWALL:Q9EUF6 (EMBL:AJ006342) (86 aa) fasta scores: E(): 0.0002, 30.38% id in 79 aa.
       0.502
virB6
Putative conjugal transfer protein; Similar to Escherichia coli VirB6 protein VirB6 SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: E(): 9e-06, 21.12% id in 355 aa.
       0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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