STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1624Hypothetical plasmid protein; No significant database matches. (431 aa)    
Predicted Functional Partners:
ECA3724
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa.
  
     0.751
ECA0500
Putative capsular polysaccharide biosynthesis protein; Similar to Methylobacillus sp. 12S EpsL epsL SWALL:BAC55133 (EMBL:AB062506) (401 aa) fasta scores: E(): 4, 20.86% id in 393 aa, and to Vibrio vulnificus conserved hypothetical protein vv12303 SWALL:AAO10679 (EMBL:AE016804) (416 aa) fasta scores: E(): 4e-82, 46.98% id in 415 aa.
 
     0.749
ECA0508
Putative membrane protein; Similar to Vibrio vulnificus hypothetical protein vv12311 SWALL:AAO10687 (EMBL:AE016804) (134 aa) fasta scores: E(): 1e-16, 45.92% id in 135 aa.
  
     0.722
ECA3723
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta scores: E(): 9.8e-89, 64.67% id in 368 aa.
  
     0.720
ECA0509
Putative exported protein; Similar to Vibrio vulnificus hypothetical protein vv12312 SWALL:AAO10688 (EMBL:AE016804) (492 aa) fasta scores: E(): 5.5e-105, 53.91% id in 447 aa. No other significant database matches.
  
     0.719
ECA3840
Similar to Yersinia pestis hypothetical protein y5204 or y1108 or ypmt1.54 SWALL:O68768 (EMBL:AF053947) (187 aa) fasta scores: E(): 7.6e-34, 56.88% id in 167 aa.
  
     0.718
ECA3726
Putative phage-related protein; Similar to Bacteriophage Mu protein Gp36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.0025, 26.02% id in 146 aa and to Salmonella typhi phage-related protein Sty1622 SWALL:Q8Z6U4 (EMBL:AL627270) (148 aa) fasta scores: E(): 4.4e-43, 75.67% id in 148 aa.
  
     0.716
ECA3722
Putative phage-related protein; Similar to Bacteriophage Mu g protein g or 31 SWALL:VPG_BPMU (SWALL:Q01261) (156 aa) fasta scores: E(): 0.003, 31.09% id in 164 aa and to Salmonella typhi putative bacteriophage protein sty1618 SWALL:Q8Z6U8 (EMBL:AL627270) (152 aa) fasta scores: E(): 1.2e-35, 71.23% id in 146 aa.
  
     0.707
ECA3704
Similar to Salmonella typhi hypothetical protein Sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 4.3e-189, 82% id in 589 aa, and to Vibrio cholerae hypothetical protein Vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 1.4e-49, 33.63% id in 559 aa.
 
     0.702
ECA3733
Putative phage-related protein; Similar to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW58 (EMBL:AB045036) (309 aa) fasta scores: E(): 1.8e-50, 53.79% id in 303 aa, and to Salmonella typhi hypothetical protein Sty1630 SWALL:Q8Z6T6 (EMBL:AL627270) (294 aa) fasta scores: E(): 1.1e-68, 65.41% id in 292 aa.
  
     0.702
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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