STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alpASimilar to Escherichia coli prophage cp4-57 regulatory protein AlpA or Alp or b2624 SWALL:ALPA_ECOLI (SWALL:P33997) (70 aa) fasta scores: E(): 0.00017, 37.28% id in 59 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 4.7e-21, 86.88% id in 61 aa. (64 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.944
ECA1626
Conserved hypothetical protein; Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:AAM85965 (EMBL:AL031866) (193 aa) fasta scores: E(): 2.3e-46, 62.17% id in 193 aa, and to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein SWALL:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 1.6e-38, 62.04% id in 166 aa.
 
     0.844
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
  0.830
intA
Similar to Escherichia coli prophage cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 1e-90, 58.56% id in 403 aa; Belongs to the 'phage' integrase family.
 
   
 0.792
traR
Putative conjugal transfer protein; Similar to Escherichia coli TraR protein TraR SWALL:TRAR_ECOLI (SWALL:P41065) (73 aa) fasta scores: E(): 1e-06, 41.66% id in 72 aa.
 
     0.786
ECA2182
Prophage integrase; Similar to Escherichia coli O157:H7 integrase protein for prophage cp-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 6.8e-46, 40.35% id in 337 aa, and to Yersinia pestis integrase int or ypo0887 or y3271 SWALL:AAM86821 (EMBL:AJ414145) (404 aa) fasta scores: E(): 5.8e-48, 41.12% id in 338 aa; Belongs to the 'phage' integrase family.
 
     0.642
ECA2178
Putative transposase (partial); Low %GC DNA.
 
  
 0.639
ECA3460
Phage integrase; Similar to Escherichia coli O157:H7 integrase protein for prophage CP-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 7.6e-123, 75.3% id in 405 aa, and to Yersinia pestis putative phage integrase ypo4033 or y4052 SWALL:AAM87596 (EMBL:AJ414160) (397 aa) fasta scores: E(): 1.5e-94, 62.67% id in 367 aa; Belongs to the 'phage' integrase family.
 
     0.635
ECA2879
Integrase; Similar to Yersinia pestis putative prophage P4 integrase IntB or y0749 SWALL:AAM84336 (EMBL:AE013677) (431 aa) fasta scores: E(): 1.7e-120, 72.53% id in 415 aa, and to Shigella flexneri Int or sf2964 SWALL:AAN44445 (EMBL:AE015309) (420 aa) fasta scores: E(): 3.5e-112, 67.95% id in 415 aa; Belongs to the 'phage' integrase family.
 
     0.633
intB-2
Integrase; Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 6.6e-96, 56.5% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 3.7e-90, 57.46% id in 402 aa; Belongs to the 'phage' integrase family.
 
     0.631
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.