STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1628Conserved hypothetical protein; Similar to Yersinia pestis orf 74 SWALL:Q9R7V2 (EMBL:AL031866) (168 aa) fasta scores: E(): 2.1e-05, 36.14% id in 83 aa, and to Yersinia pseudotuberculosis hypothetical 35.5 kDa protein SWALL:Q9X9G6 (EMBL:AJ236887) (308 aa) fasta scores: E(): 5.4e-14, 39% id in 141 aa. (174 aa)    
Predicted Functional Partners:
alpA
Similar to Escherichia coli prophage cp4-57 regulatory protein AlpA or Alp or b2624 SWALL:ALPA_ECOLI (SWALL:P33997) (70 aa) fasta scores: E(): 0.00017, 37.28% id in 59 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 4.7e-21, 86.88% id in 61 aa.
       0.416
traR
Putative conjugal transfer protein; Similar to Escherichia coli TraR protein TraR SWALL:TRAR_ECOLI (SWALL:P41065) (73 aa) fasta scores: E(): 1e-06, 41.66% id in 72 aa.
       0.411
ECA1626
Conserved hypothetical protein; Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:AAM85965 (EMBL:AL031866) (193 aa) fasta scores: E(): 2.3e-46, 62.17% id in 193 aa, and to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein SWALL:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 1.6e-38, 62.04% id in 166 aa.
       0.409
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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