STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1638Hns-like DNA-binding protein; Similar to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 0.039, 33.75% id in 80 aa, and to Escherichia coli O6 hypothetical protein c2413 SWALL:Q8FGG4 (EMBL:AE016762) (80 aa) fasta scores: E(): 3.3e-18, 75.64% id in 78 aa. (80 aa)    
Predicted Functional Partners:
ECA1637
Hypothetical protein; No significant database matches.
       0.574
hha
Haemolysin expression modulating protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri haemolysin expression modulating protein Hha or b0460 or c0578 or z0573 or ecs0513 or sf0405 SWALL:HHA_ECOLI (SWALL:P23870) (72 aa) fasta scores: E(): 1.1e-20, 77.61% id in 67 aa.
      
 0.544
ECA1636
Hypothetical protein; No significant database matches.
       0.513
expM
Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
      
 0.474
fis
DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.
      
 0.473
ECA1639
Hypothetical protein; No significant database matches.
       0.435
ECA1635
Hypothetical protein; No significant database matches.
       0.419
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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