STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1668Putative type IV prepilin; Similar to Escherichia coli O6 PilV-like protein c2394 SWALL:AAN80853 (EMBL:AE016762) (487 aa) fasta scores: E(): 4.2e-75, 52.14% id in 443 aa, and to Salmonella typhimurium type IV prepilin pilV SWALL:BAB91683 (EMBL:AP005147) (474 aa) fasta scores: E(): 2e-06, 26.94% id in 464 aa. (530 aa)    
Predicted Functional Partners:
ECA1667
Similar to Escherichia coli O6 putative type IV pilin protein precursor c2395 SWALL:Q8CVY4 (EMBL:AE016762) (185 aa) fasta scores: E(): 5e-33, 52.68% id in 186 aa.
       0.526
ECA1669
Similar to Yersinia pestis hypothetical protein ypo0873 or y3255 SWALL:Q8ZHL8 (EMBL:AJ414145) (512 aa) fasta scores: E(): 4.6e-50, 42.01% id in 545 aa.
       0.470
ECA1669A
Similar to Neisseria meningitidis hypothetical protein Nma0318 SWALL:Q9JWL2 (EMBL:AL162752) (68 aa) fasta scores: E(): 0.00015, 42.59% id in 54 aa, and to Clostridium perfringens hypothetical protein Cpe0646 SWALL:Q8XMP2 (EMBL:AP003187) (51 aa) fasta scores: E(): 4.2, 28.84% id in 52 aa.
       0.466
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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