STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1674Similar to Pyrococcus furiosus hypothetical protein Pf0664 SWALL:Q8U312 (EMBL:AE010187) (102 aa) fasta scores: E(): 2.1e-05, 31.81% id in 88 aa. (94 aa)    
Predicted Functional Partners:
ECA1673
Integrase (partial); Partial CDS. Similar to the C-terminal regions of many phage integrases including Escherichia coli prophage P4 integrase IntB or b4271 SWALL:INTB_ECOLI (SWALL:P39347) (396 aa) fasta scores: E(): 3.6e-13, 70.21% id in 47 aa.
       0.773
ECA2242
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.581
scrY
Putative sucrose porin; Similar to Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 1.3e-125, 63.33% id in 510 aa, and to Erwinia amylovora porin ScrY SWALL:Q9F4A0 (EMBL:AJ250722) (514 aa) fasta scores: E(): 8.5e-118, 62.57% id in 521 aa.
  
     0.580
ECA3764
Similar to Pseudomonas aeruginosa probable sodium:solute symporter pa0287 SWALL:Q9I6K3 (EMBL:AE004466) (461 aa) fasta scores: E(): 4.1e-21, 23.02% id in 456 aa, and to Vibrio vulnificus na+/proline symporter vv20592 SWALL:AAO07538 (EMBL:AE016810) (492 aa) fasta scores: E(): 8.5e-19, 25.05% id in 455 aa; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.571
ECA2819
Hypothetical protein; Weakly similar to Bacillus subtilis hypothetical protein YsfE SWALL:P94533 (EMBL:Z75208) (80 aa) fasta scores: E(): 0.92, 30% id in 60 aa.
  
     0.533
ECA1672A
Hypothetical protein; No significant database matches.
       0.529
nifL
Similar to Klebsiella pneumoniae nitrogen fixation regulatory protein NifL SWALL:NIFL_KLEPN (SWALL:P06772) (495 aa) fasta scores: E(): 2e-130, 66.46% id in 495 aa, and to Pantoea agglomerans NifL protein NifL SWALL:Q57340 (EMBL:X99694) (495 aa) fasta scores: E(): 5.8e-122, 61.21% id in 495 aa.
  
     0.527
ECA1672
Hypothetical protein; No significant database matches.
       0.482
ECA1675
Putative integrase (partial); Partial CDS. Similar to the C-terminal regions of several phage integrases including Escherichia coli O6 putative P4-family integrase c2392 SWALL:AAN80851 (EMBL:AE016762) (406 aa) fasta scores: E(): 7.5e-08, 52.85% id in 70 aa, and to Xanthomonas axonopodis phage-related integrase IntA or xac1664 SWALL:Q8PLX5 (EMBL:AE011798) (396 aa) fasta scores: E(): 0.0014, 59.09% id in 44 aa.
       0.482
chpA
Putative growth inhibitory protein; Similar to Escherichia coli, and Escherichia coli O157:H7 PemK-like protein 1 ChpA or MazF or ChpaK or b2782 or z4097 or ecs3642 SWALL:CHPA_ECOLI (SWALL:P33645) (111 aa) fasta scores: E(): 5.2e-31, 72.97% id in 111 aa, and to Deinococcus radiodurans ppgpp-regulated growth inhibitor chpa/mazf, putative dr0417 SWALL:Q9RX98 (EMBL:AE001901) (117 aa) fasta scores: E(): 5e-18, 48.21% id in 112 aa.
       0.482
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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