STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheWChemotaxis protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri chemotaxis protein CheW or b1887 or c2302 or z2941 or ecs2597 or sf1936 SWALL:CHEW_ECOLI (SWALL:P07365) (167 aa) fasta scores: E(): 3.6e-50, 86.33% id in 161 aa. (165 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein; Similar to Escherichia coli chemotaxis protein CheA or b1888 SWALL:CHEA_ECOLI (SWALL:P07363) (654 aa) fasta scores: E(): 2.8e-114, 74.4% id in 668 aa.
 
 0.999
cheD
Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.3e-112, 63.81% id in 561 aa.
 
 0.996
cheB
Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.990
ECA3838
Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 3.7e-77, 49.51% id in 515 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor trg or stm1626 SWALL:Q8ZPA9 (EMBL:AE008771) (541 aa) fasta scores: E(): 4.2e-82, 52.97% id in 521 aa.
 
 0.990
ECA0091
Similar to Yersinia pestis methyl-accepting chemotaxis protein II Tar or Tsr SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 2.3e-112, 57.98% id in 626 aa, and to Escherichia coli methyl-accepting chemotaxis protein III Trg SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 5.9e-56, 55.47% id in 393 aa.
 
 0.987
ECA0390
Similar to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsc1460 SWALL:Q8XZE1 (EMBL:AL646064) (513 aa) fasta scores: E(): 3.5e-62, 42.3% id in 520 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.4e-57, 39.42% id in 553 aa.
 
 0.987
ECA1281
Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.4e-83, 51.52% id in 559 aa, and to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 6e-85, 53.86% id in 557 aa.
 
 0.987
aer1
Aerotaxis receptor; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 9.2e-69, 40.31% id in 501 aa. Also similar to ECA2002 (64.808% id in 520 aa overlap).
 
 0.987
aer2
Aerotaxis receptor; Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 1.7e-71, 41.82% id in 514 aa. Also similar to ECA2001 (64.808% id in 520 aa overlap).
 
 0.987
ECA2317
Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2.1e-47, 31.81% id in 528 aa, and to Yersinia pestis putative methyl-accepting chemotaxis protein y3190 SWALL:AAM86740 (EMBL:AE013920) (566 aa) fasta scores: E(): 8e-81, 47.86% id in 516 aa.
 
 0.987
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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